Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Hybrid sweetgum transcriptome of tissues with different embryogenicity

PROVIDER: PRJNA793003 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR17422655_1.fastq.gz	Fastqsanger.gz
	SRR17422655_2.fastq.gz	Fastqsanger.gz
	SRR17422656_1.fastq.gz	Fastqsanger.gz
	SRR17422656_2.fastq.gz	Fastqsanger.gz
	SRR17422657_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 24

Similar Datasets

Expression atlas of chickpea during development

Project description:In this study, we aim to present a global view of transcriptome dynamics in different tissues/organs/developmental stage in chickpea. We generated about ~31-95 million reads from each of 94 libraries representing 32 different tissues/organs using Illumina platform. We generated a hybrid assembly of these data along with PacBio data to produce full-length transcriptome assembly. We mapped the reads to the transcriptome assembly for estimation of the abundance of coding and long non-coding transcripts in different tissue samples. The transcriptome dynamics was studied by differential and tissue-specific expression analyses, and co-expression network and transcriptional regulatory network analyses.

2022-10-26 | GSE147831 | GEO

Transcriptome analysis of different tissues in different materials

Project description:We used two hybrid combinations and their 4 parents as materials. One week after topping the tobacco plant, samples were taken, including three tissues: root, stalk, and leaf. The RNA of these samples was extracted, and transcriptome sequencing analysis was carried out to explore the transcriptional profile differences between hybrids and their parents, and to analyze the gene differential expression between different tissues.

2023-06-09 | GSE233199 | GEO

A spatiotemporal dynamic atlas of circular RNAs unraveled extensive intraspecific and developmental variation in maize

Project description:We assembled a complete transcriptomic landscape integrating both linear and circRNAs across 26 different tissues and stages in a classic maize hybrid triplet - B73, Mo17, and their hybrid F1.

2024-03-30 | GSE199881 | GEO

procambarus clarkii

Project description:Different tissues of crayfish Transcriptome

| PRJNA1097744 | ENA

Project description:transcriptome of different tea tissues

| PRJNA1060784 | ENA

Project description:PMN transcriptome in different tissues

| PRJNA1053498 | ENA

Transcriptome analysis of different tissues in different materials

Project description:Transcriptome analysis of different tissues in different materials

| PRJNA975370 | ENA

Genome-wide analysis of transcriptome and histone modifications in Brassica napus hybrids

Project description:Although utilization of heterosis has largely improved the yield of many crops worldwide, the underlying molecular mechanism of heterosis, particularly for allopolyploids, remains unclear. Here, we compared epigenome and transcriptome data of an elite hybrid and its parental lines in three assessed tissues (seedling, flower bud, and silique) to explore their contribution to heterosis in allopolyploid B. napus. Transcriptome analysis illustrated that a small proportion of non-additive genes in the hybrid compared with its parents, as well as parental expression level dominance, might have a significant effect on heterosis. We identified histone modification (H3K4me3 and H3K27me3) variation between the parents and hybrid, most of which resulted from the differences between parents. H3K4me3 variations were positively correlated with gene expression differences among the hybrid and its parents. Furthermore, H3K4me3 and H3K27me3 were rather stable in hybridization and were mainly inherited additively in the B. napus hybrid. Together, our data revealed that transcriptome reprogramming and histone modification remodeling in the hybrid could serve as valuable resources for better understanding heterosis in allopolyploid crops.

2023-07-18 | GSE218592 | GEO

Project description:Hydrangea transcriptome data of different tissues

| PRJNA800838 | ENA

Single nuclei transcriptomic of Populus tremula x alba apex

Project description:Here we applied a novel approach to isolate nuclei from complex plant tissues (https://doi.org/10.1371/journal.pone.0251149), to dissect the transcriptome profiling of the hybrid poplar (Populus tremula × alba) vegetative shoot apex at single-cell resolution.

2022-10-04 | GSE190649 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data