Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Optimizing laboratory methods for metabarcoding marine fish

PROVIDER: PRJNA793893 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR17415100_1.fastq.gz	Fastqsanger.gz
	SRR17415100_2.fastq.gz	Fastqsanger.gz
	SRR17415101_1.fastq.gz	Fastqsanger.gz
	SRR17415101_2.fastq.gz	Fastqsanger.gz
	SRR17415102_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 122

Similar Datasets

Project description:Marine fish eDNA metabarcoding

| PRJNA802546 | ENA

Ichthyoplankton metabarcoding

Project description:Rapid methods for quantitative fish larvae community assessment using metabarcoding

| PRJEB34498 | ENA

Project description:Rapid methods for quantitative fish larvae community assessment using metabarcoding

| PRJNA576002 | ENA

Project description:Optimizing DNA extraction methods for assessing organic enrichment in marine farm sediments

| PRJNA657189 | ENA

Project description:Fish eDNA metabarcoding

| PRJNA1049655 | ENA

Suppression of microRNA-125b in response to IPNV infection which lead to TNFα-mediated apoptosis of viral pathogenesis

Project description:Infectious pancreatic necrosis virus (IPNV) is an aquatic virus that causes acute infection in freshwater and marine fish. The stage-specific expression of TNFα regulates Bad/Bid-mediated apoptosis and RIP1/ROS-mediated secondary necrosis in IPNV-infected fish cells. Using microRNA microarray and real-time quantitative PCR assays, the expression patterns of microRNA were characterized in different replication stages of IPNV or stimulation of LPS.

2011-12-31 | GSE30262 | GEO

Towards functional profiling for eDNA based monitoring in coastal environments: a comparison of three approaches

Project description:Monitoring microbial communities can aid in understanding the state of these habitats. Environmental DNA (eDNA) techniques provide efficient and comprehensive monitoring by capturing broader diversity. Besides structural profiling, eDNA methods allow the study of functional profiles, encompassing the genes within the microbial community. In this study, three methodologies were compared for functional profiling of microbial communities in estuarine and coastal sites in the Bay of Biscay. The methodologies included inference from 16S metabarcoding data using Tax4Fun, GeoChip microarrays, and shotgun metagenomics.

2024-04-14 | E-MTAB-13075 | biostudies-arrayexpress

Project description:Extraction methods for pollen metabarcoding

| PRJNA1034601 | ENA

Transcriptional response of Atlantic salmon (Salmo salar) to fish oil vs vegetable oil based diets

Project description:The effect of different diets (i.e. fish oil based vs vegetable oil based) on liver transcription profiles over the life history stages (freshwater and marine phases) of cultured Atlantic salmon (Salmo salar) were explored. Two groups of fish were raised from first feeding on different lipid containing diets; a) the standard 100% fish oil based diet, the other enriched with a blend of vegetable oils (75%) + fish oil (25%). Liver samples were taken from fish at four time points: two freshwater phase (as parr 36 weeks post hatch (wph); as pre-smolts, 52 wph) and two marine phase ( as post-smolts 55 wph; and as adult fish , 86 wph). A total of 96 cDNA microarray hybridisations - TRAITS / SGP Atlantic salmon 17k feature cDNA microarray - were performed ( 2 diets x 4 time points x 6 biological replicates x 2 -dye swap) using a comon pooled reference contol design.

2008-08-01 | E-TABM-449 | biostudies-arrayexpress

fish metagenome

Project description:Metabarcoding of river fish

| PRJDB8024 | ENA