Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Next Generation Sequencing Analysis of Wild Type,o2 and QPM Transcriptomes in 20DAP(day after pollination) endosperm

PROVIDER: PRJNA799496 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR17701789_1.fastq.gz	Fastqsanger.gz
	SRR17701789_2.fastq.gz	Fastqsanger.gz
	SRR17701790_1.fastq.gz	Fastqsanger.gz
	SRR17701790_2.fastq.gz	Fastqsanger.gz
	SRR17701791_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 18

Similar Datasets

Next Generation Sequencing Analysis of Wild Type and fl3 Transcriptomes in 10DAP(day after pollination) endosperm

Project description:Maize floury3 (fl3) is a classic semi-dominant mutant that shows severe defects in the endosperm but appears normal in the plant.The goals of this study are to compare WT to fl3 transcriptomes in 10DAP(day after pollination) endosperm by Next Generation Sequencing.

2017-07-22 | GSE95039 | GEO

Zea mays

Project description:Next Generation Sequencing Analysis of Wild Type and fl3 Transcriptomes in 10DAP(day after pollination) endosperm

| PRJNA375801 | ENA

Project description:Next Generation Sequencing Analysis of Wild Type, smk7,fl3 and double mutant Transcriptomes in 15DAP(day after pollination) endosperm

| PRJNA639712 | ENA

Genome-wide characterization of cis-acting DNA targets of Opaque2 in maize

Project description:Opaque2 (O2) is a transcription factor that plays important roles during maize endosperm development. Mutation of the O2 gene improves the nutritional value of maize seeds, but also confers pleiotropic effects that result in reduced agronomic quality. To reveal the transcriptional regulatory framework of O2, we determined O2 DNA binding targets using chromatin immunoprecipitation coupled to high-throughput sequencing (ChIP-Seq). ChIP-Seq analysis detected 1,686 O2 DNA binding sites distributed over 1,143 genes. We identified 4 new O2 binding motifs; among them, TGACGTGG appears to be the most conserved and strongest. We confirmed that, except for the 16 kD and 18 kD zeins, O2 directly regulates expression of all other zeins. O2 directly regulates two transcription factors, genes linked to carbon and amino acid metabolism and abiotic stress resistance. Examination of 15 days after pollination(DAP) wild type maize endosperm with O2 specific antibody and IgG serves as control.

2015-03-06 | E-GEOD-63991 | biostudies-arrayexpress

Mus musculus

Project description:Next Generation Sequencing Analysis of Wild Type and SRSF10-/- embryonic day 13.5 heart Transcriptomes

| PRJNA278507 | ENA

Next Generation Sequencing Facillitates Quantitative Analysis of Wild Type and snrk1a1/a2 mutant Transcriptomes

Project description:Next Generation Sequencing Facillitates Quantitative Analysis of Wild Type and snrk1a1/a2 mutant Transcriptomes

2021-12-31 | GSE183118 | GEO

Effects of pE66L missing on ASFV

Project description:Identify the function of pE66L Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and Nrl-- Retinal Transcriptomes

2020-09-23 | GSE158335 | GEO

Next Generation Sequencing Facilitates Quantitative Analysis of Transcriptomes for Wild Type and Mutants including opaque2, PbfRNAi and PbfRNAi;o2 in Maize (Zea mays)

Project description:The goals of this study are to study the regulatory network of the two maize endosperm-specific transcription factors O2 and PBF by 16-DAP endosperm transcriptome profiling (RNA-seq) of their mutants and wild type. The results utilize the expression pattern of global genes regulated by PBF and O2 to elucidate their control for storage compounds synthesis in maize kernels.

2016-03-24 | GSE79513 | GEO

Project description:Next Generation Sequencing Analysis of Wild Type and Rfx2-/- Testicular Transcriptomes

| PRJNA266762 | ENA

Next Generation Sequencing Analysis of Wild Type and SESAME Transcriptomes I

Project description:Next Generation Sequencing Analysis of Wild Type and SESAME Transcriptomes I

| PRJNA616331 | ENA