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Camellia sinensis

ABSTRACT: The sequence of long non-coding RNAs (lncRNAs) and circular RNAs (circRNAs) originating from tea (Camellia sinensis) leaves infected by Didymella bellidis strain CGMCC3.20149

PROVIDER: PRJNA800249 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
	SRR17775356_1.fastq.gz	Fastqsanger.gz
	SRR17775356_2.fastq.gz	Fastqsanger.gz
	SRR17775357_1.fastq.gz	Fastqsanger.gz
	SRR17775357_2.fastq.gz	Fastqsanger.gz
	SRR17775358_1.fastq.gz	Fastqsanger.gz

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Camellia sinensis

Project description:The sequence of long non-coding RNAs (lncRNAs) and circular RNAs (circRNAs) originating from tea leaves infected by Didymella segeticola strain CGMCC3.20152

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Project description:The sequence of messenger RNAs (mRNAs) originating from tea (Camellia sinensis) leaves infected by Didymella bellidis strain CGMCC3.20149

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Camellia sinensis cultivar:Fuding-Dabai Cha

Project description:The sequence files of long non-coding RNAs (lncRNAs) and circular RNAs (circRNAs) originating from tea leaves infected by Didymella segeticola strain CGMCC3.20152

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Camellia sinensis strain:ACCC39730

Project description:The sequence of long non-coding RNAs (lncRNAs) and circular RNAs (circRNAs) originating from tea leaves infected by Pestalotiopsis trachicarpicola strain ACCC39730.

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Characterizing microRNAs and their targets in differnt organs of Camellia sinensis [degradome]

Project description:MicroRNAs (miRNAs) are a type of small non-coding RNAs, which play important roles in plant growth, development and stress responses. Tea (Camellia sinensis) prepared from tea tree is the oldest and most popular nonalcoholic beverages in the world, and has large economic, medicinal and cultural significance. Nevertheless, there are a few studies on the miRNAs and their functions in Camellia sinensis. We sequenced 9 small RNA libraries and 9 RNA-Seq libraries from roots, leaves and flowers tissues. Through comprehensive computational analyses of 9 small RNA profiles, we identified 200 conserved miRNAs of which 138 have not been reported, and 56 novel miRNAs with 33 have not been reported. Nearly, two thousands genes have significantly different expression levels in tissues. In order to identify targets of miRNAs, we sequenced two degradome profiles from leaves and roots, respectively. Totally, more than 3,000 putative targets of conserved miRNAs were identified in both degradome profiles by using the SeqTar algorithm. These results clearly enhanced our understanding about small RNA guided gene regulations in Camellia sinensis.

2020-12-31 | GSE138150 | GEO

Characterizing microRNAs and their targets in differnt organs of Camellia sinensis [miRNA-seq]

2020-12-31 | GSE138149 | GEO