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RNA-seq of Acinetobacter baumannii ATCC 17978 Lab-WT: under blue light

ABSTRACT: RNA-seq of Acinetobacter baumannii ATCC 17978 Lab-WT: under blue light

PROVIDER: PRJNA801620 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR17804660_1.fastq.gz	Fastqsanger.gz
	SRR17804660_2.fastq.gz	Fastqsanger.gz
	SRR17804661_1.fastq.gz	Fastqsanger.gz
	SRR17804661_2.fastq.gz	Fastqsanger.gz

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RNA-seq of Acinetobacter baumannii ATCC 17978 Lab-WT: under blue light

Project description:Comparison for gene expression of Acinetobacter baumannii Lab-WT under blue light irradiation

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Comparative transcriptional analysis of Acinetobacter baumannii strain ATCC 17978 and strain 17978hm

Project description:In this study the transcriptomes of Acinetobacter baumannii strains ATCC 17978 and 17978hm were compared. Strain 17978hm is a hns knockout derivative of strain ATCC 17978. Strain 17978hm displays a hyper-motile phenotype on semi-solid Mueller-Hinton (MH) media (0.25% agar). ATCC 17978 and 17978hm from an 37C overnight culture were transferred to the centre of the semi-solid MH plate and incubated at 37C for 8 hours. Only 17978hm cells displayed a motile phenotype and covered the complete surface of the plate. These motile 17978hm cells and the non-motile wild-type ATCC 17978 cells were harvested and RNA was isolated. The comparative transcriptome analysis was performed using the FairPlay labeling kit and a custom made Agilent MicroArray with probes designed to coding regions of the ATCC 17978 genome. The data was analyzed using Agilent GeneSpring GX9 and the significance analysis of microarray MS Excel add-on.

2013-08-05 | GSE40681 | GEO

Acinetobacter baumannii ATCC 17978 Transcriptome Sequencing 37ºC Light/Dark

Project description:We performed RNA sequencing analysis with differential expression analysis to compare the expression of genes between A. baumannii 17978 wildtype strain grown in the light and the dark. The purpose was to determine any genes whose expression was mediated by light at 37ºC, a temperature at which the currently best studied photoreceptor for A. baumannii BlsA, is unfunctional.

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Acinetobacter baumannii ATCC 17978 Transcriptome Sequencing 37ºC Light/Dark

Project description:Acinetobacter baumannii ATCC 17978 Transcriptome Sequencing 37ºC Light/Dark

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Comparative transcriptional analysis of Acinetobacter baumannii strain ATCC 17978 and strain 17978hm

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Genes expression analysis of chemical-induced hypooctyl elongation under blue light irradiation

Project description:To understand the transcript regulation of early Arabidopsis seedlings developments with different chemicals under continuous blue light irradiation.

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Project description:Light quality is an important abiotic factor that affects growth and development of photosynthetic organism. In this study, D. salina was exposed to red (660 nm) and blue light (450 nm), and cell growth, pigments, and transcriptome were analyzed. The RNA of D. salina was sequenced and transcriptomic response of algal cells after transitioning from white light to red and blue light was investigated. Genes encoding for enzymes involved in photosynthesis were down-regulated, whereas genes involved in the metabolism of carotenoid were up-regulated. Genes encoding for photoprotective enzymes related to reactive oxygen species scavenging were up-regulated under both red and blue light. The present transcriptomic study would assist in the comprehensive understanding of carotenoid biosynthesis of D. salina.

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