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Noncoding RNA HID1 promotes phyB-dependent seed germination by repressing the biosynthesis of ABA [ChIRP-seq]

ABSTRACT: Noncoding RNA HID1 promotes phyB-dependent seed germination by repressing the biosynthesis of ABA [ChIRP-seq]

PROVIDER: PRJNA802051 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR17830629_1.fastq.gz	Fastqsanger.gz
	SRR17830629_2.fastq.gz	Fastqsanger.gz
	SRR17830630_1.fastq.gz	Fastqsanger.gz
	SRR17830630_2.fastq.gz	Fastqsanger.gz
	SRR17830631_1.fastq.gz	Fastqsanger.gz

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Noncoding RNA HID1 promotes phyB-dependent seed germination by repressing the biosynthesis of ABA [ChIRP-seq]

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Noncoding RNA HID1 promotes phyB-dependent seed germination by repressing the biosynthesis of ABA.

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Noncoding RNA HID1 promotes phyB-dependent seed germination by repressing the biosynthesis of ABA [ChIP-seq]

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Project description:ZFP3, a nuclear C2H2 zinc finger protein acts as a negative regulator of ABA- suppressed germination. Regulated over-expression of ZFP3 and closely related ZFP1, ZFP4, ZFP6 and ZFP7 confers ABA insensitivity to seed germination while the zfp3,zfp4 double mutant displays enhanced ABA susceptibility. Reduced expression of a large set of ABA-induced genes such as RAB18 and transcription factors ABI3, ABI4, ABI5 and RGL2 in ZFP3ox seedling suggests that ZFP3 indeed negatively regulates ABA signaling. Analysis of ZFP3ox plants revealed multiple phenotypic alterations such as semidwarf growth habit, defects in fertility and enhanced sensitivity of hypocotyl elongation to red but not to far-red or blue light. Analysis of genetic interactions with phytochrome and abi mutants suggested that ZFP3 amplifies red light signals perceived by photoreceptors other than phyB, and controlled by ABI5 downstream of ZFP3.

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The Arabidopsis Zinc Finger Protein 3 integrates ABA and light signaling in seed germination and plant development

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Noncoding RNA HID1 promotes phyB-dependent seed germination by repressing the biosynthesis of ABA.

Project description:This SuperSeries is composed of the SubSeries listed below.

2024-05-04 | GSE195748 | GEO

Temperature-controlled inhibition of phyB action

Project description:It has been established that the frequently reported early flowering phenotype of the phyB mutant is very sensitive to small changes in ambient temperature (Halliday et al., 2003). A 6oC drop in temperature to 16oC is sufficient to abolish the pronounced early flowering phyB phenotype observed at 22oC. Using Affymetrix technology we will identify genes that are differentially regulated at 16oC and 22oC in a phyB-specific manner using phyB mutant and wild type seedlings. 16 samples were used in this experiment.

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