Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Symbiont community composition in Rimicaris kairei shrimps from Indian Ocean vents with notes on mineralogy

PROVIDER: PRJNA802196 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR17838202_1.fastq.gz	Fastqsanger.gz
	SRR17838202_2.fastq.gz	Fastqsanger.gz
	SRR17838203_1.fastq.gz	Fastqsanger.gz
	SRR17838203_2.fastq.gz	Fastqsanger.gz
	SRR17838204_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 26

Similar Datasets

Rimicaris kairei

Project description:Rimicaris kairei overview

| PRJNA190759 | ENA

gut metagenome of Rimicaris kairei

Project description:Rimicaris kairei Raw sequence reads

| PRJNA931729 | ENA

invertebrate gut metagenome

Project description:Gut microbiota of hydrothermal vent Rimicaris Kairei in Central Indian Ridge hydrothermal vent

| PRJNA769821 | ENA

mollusc metagenome

Project description:Symbiont population genomics of Scaly-foot Snails in the hydrothermal vents of Indian Ocean

| PRJNA764822 | ENA

Molecular response of Sargassum vulgare to acidified waters in natural CO2 vents – Insights from de novo transcriptomic analysis

Project description:Sargassum is one of the most diverse brown algal genus with more than 150 known species, mostly benthic and few pelagic species. They contribute significantly to global primary production and serve as important habitat for wide range of marine organisms. Sargassum vulgare is one of the dominant habitat forming species along Mediterranean coast. Despite their huge ecological importance, it is relatively unknown how they will respond under future global climate change scenario. This work used de novo transcriptome sequencing approach to understand the molecular response of S. vulgare to chronic acidification at the shallow underwater volcanic CO2 vents off Ischia Island, Italy. Keywords: brown algae, Sargassum, de novo transcriptome, ocean acidification, CO2 vents.

2017-01-16 | GSE78707 | GEO

Metaproteomics analysis of microbial structure on the surface of Indian Ocean

Project description:In this study we characterize microbial community features on the surface of Indian Ocean. 11 samples were collected from Indian Ocean and subjected for quantitative metaproteomics analysis for taxonomic and functional analysis. Our results suggested that metabolic tuning at metaproteomics levels enabled microbial community to sustain stable when subjected to environmental perturbations in the oligotrophic ocean.

2023-05-10 | PXD016285 | Pride

Deep-sea sediments

Project description:Deep-sea sediments of the Kairei and Pelagia areas in the Indian Ocean

| PRJNA474182 | ENA

money metagenome

Project description:Metagenome of Indian Currency Notes Metagenome

| PRJNA253515 | ENA

Project description:Bacterial community composition in the Indian Ocean

| PRJNA816534 | ENA

Adaptive response of the sea urchin Paracentrotus lividus to ocean acidification at a volcanic CO2 vent’s system (Mediterranean Sea, Italy)

Project description:Ocean acidification is recognized as one of the most pervasive anthropogenic impact on marine life. A variety of responses have been highlighted in different marine organisms ranging from physiology to gene and protein expression. However, most of these studies have been performed in laboratory exposing adults or developmental stages to CO2 enriched seawater. To what extend the information obtained from these in vitro experiments may be extrapolated to a natural environment is questionable. Here, we utilized the Castello volcanic CO2 vents at Ischia as natural laboratory to study the P. lividus population living at the low pH zone (pH~7.8) compared to those of sea urchins living at control sites. Wide-ranging analyses were performed in animals collected at the acidified site, including the monitoring of their position, the determination of the physico-chemical parameters of the coelomic fluid and an in depth characterization of coelomocytes regarding the number and type of cells, Hsp70 expression, redox status and protein expression through de-novo sequencing analyses. In addition, the respiration, nitrogen metabolism, and skeletal mineralogy of urchins from the vent were examined in comparison with those from control animals. Overall these analyses allowed to understand how the sea urchins can thrive in low pH/high CO2.

2022-02-28 | PXD009395 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data