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Anser cygnoides domesticus strain:Chinese local goose | isolate:Chengdu | breed:Tianfu meat goose | cultivar:Guangliang Gao

ABSTRACT: Chinese local goose and mouse fatty liver model for NALFD

PROVIDER: PRJNA802613 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR17930749_1.fastq.gz	Fastqsanger.gz
	SRR17930749_2.fastq.gz	Fastqsanger.gz
	SRR17930750_1.fastq.gz	Fastqsanger.gz
	SRR17930750_2.fastq.gz	Fastqsanger.gz
	SRR17930751_1.fastq.gz	Fastqsanger.gz

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Anser cygnoides domesticus strain:Chinese local goose | breed:Sichuan White Goose

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Telomere-to-telomere genome assembly of the goose Anser cygnoides.

Project description:Our study presents the assembly of a high-quality Taihu goose genome at the Telomere-to-Telomere (T2T) level. By employing advanced sequencing technologies, including Pacific Biosciences HiFi reads, Oxford Nanopore long reads, Illumina short reads, and chromatin conformation capture (Hi-C), we achieved an exceptional assembly. The T2T assembly encompasses a total length of 1,197,991,206 bp, with contigs N50 reaching 33,928,929 bp and scaffold N50 attaining 81,007,908 bp. It consists of 73 scaffolds, including 38 autosomes and one pair of Z/W sex chromosomes. Importantly, 33 autosomes were assembled without any gap, resulting in a contiguous representation. Furthermore, gene annotation efforts identified 34,898 genes, including 436,162 RNA transcripts, encompassing 806,158 exons, 743,910 introns, 651,148 coding sequences (CDS), and 135,622 untranslated regions (UTR). The T2T-level chromosome-scale goose genome assembly provides a vital foundation for future genetic improvement and understanding the genetic mechanisms underlying important traits in geese.

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Isolation of Mycoplasma anserisalpingitidis from swan goose (Anser cygnoides) in China.

Project description:BackgroundMycoplasma anserisalpingitidis causes significant economic losses in the domestic goose (Anser anser) industry in Europe. As 95% of the global goose production is in China where the primary species is the swan goose (Anser cygnoides), it is crucial to know whether the agent is present in this region of the world.ResultsPurulent cloaca and purulent or necrotic phallus inflammation were observed in affected animals which represented 1-2% of a swan goose breeding flock (75,000 animals) near Guanghzou, China, in September 2019. From twelve sampled animals the cloaca swabs of five birds (three male, two female) were demonstrated to be M. anserisalpingitidis positive by PCR and the agent was successfully isolated from the samples of three female geese. Based on whole genome sequence analysis, the examined isolate showed high genetic similarity (84.67%) with the European isolates. The antibiotic susceptibility profiles of two swan goose isolates, determined by microbroth dilution method against 12 antibiotics and an antibiotic combination were also similar to the European domestic goose ones with tylvalosin and tiamulin being the most effective drugs.ConclusionsTo the best of our knowledge this is the first description of M. anserisalpingitidis infection in swan goose, thus the study highlights the importance of mycoplasmosis in the goose industry on a global scale.

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