Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Lake metagenomes of lakeshore zones of alpine lakes on Qinghai-Tibet Plateau, China

ABSTRACT: lake metagenomes of lakeshore zones of alpine lakes on Qinghai-Tibet Plateau, China Raw sequence reads

PROVIDER: PRJNA805366 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR17982100_1.fastq.gz	Fastqsanger.gz
	SRR17982100_2.fastq.gz	Fastqsanger.gz
	SRR17982101_1.fastq.gz	Fastqsanger.gz
	SRR17982101_2.fastq.gz	Fastqsanger.gz
	SRR17982102_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 142

Similar Datasets

Qinghai-Tibet Plateau soil

Project description:Qinghai-Tibet Plateau soil

| PRJNA658924 | ENA

The microbial functional diversity in response to altered precipitation on Tibet Plateau as characterized by GeoChip

Project description:Global warming substantially changes precipitation patterns in the Tibetan plateau, with projection of increased precipitation in southern and northern Tibet but decreased precipitation in the center. Understanding mechanisms of such changes in greenhouse gas emissions is of vital importance in predicting ecosystem feedbacks to climate changes. Nonetheless, it has been hampered by limited knowledge in soil microbial communities, one of the major drivers of greenhouse gas emission. Here, we report a field experiment simulating drying and wetting conditions in the Tibetan grassland. Our field site is located at the Haibei Alpine Grassland Ecosystem Research Station in the northeast of Tibet Plateau, China, and we employed GeoChip 5.0 180K to analyze microbial responses.

2016-05-28 | GSE82006 | GEO

soil of uninhabited areas on Qinghai-Tibet Plateau

Project description:soil of uninhabited areas on Qinghai-Tibet Plateau Raw sequence reads

| PRJNA860008 | ENA

Soil nematode Degraded grassland on Qinghai-Tibet Plateau

Project description:Soil nematode Degraded grassland on Qinghai-Tibet Plateau Raw sequence reads

| PRJNA988063 | ENA

wetland soil fungal community from Qinghai-Tibet plateau

Project description:wetland soil fungal community from Qinghai-Tibet plateau Raw sequence reads

| PRJNA797885 | ENA

The microbial functional diversity in response to altered precipitation on Tibet Plateau as characterized by GeoChip

2016-05-28 | E-GEOD-82006 | biostudies-arrayexpress

Tibet Alpine meadow siol

Project description:Tibet alpine meadow siol Raw sequence reads

| PRJNA765868 | ENA

Metagenomic analysis revealed the microbial-mediated soil organic carbon loss under the degeneration succession in alpine meadow

Project description:Land cover change has long been recognized that marked effect the amount of soil organic carbon. However, little is known about microbial-mediated effect processes and mechanism on soil organic carbon. In this study, the soil samples in a degenerated succession from alpine meadow to alpine steppe meadow in Qinghai-Tibetan Plateau degenerated, were analyzed by using GeoChip functional gene arrays.

2017-01-05 | GSE93158 | GEO

Bacteria and fungi in different degraded grasslands on the Qinghai-Tibet Plateau

Project description:Bacteria and fungi in different degraded grasslands on the Qinghai-Tibet Plateau Raw sequence reads

| PRJNA987866 | ENA

Saline lakes on the Qinghai-Tibet Plateau harbor unique viral assemblages mediating microbial environmental adaption.

Project description:The highest plateau on Earth, Qinghai-Tibet Plateau, contains thousands of lakes with broad salinity and diverse and unique microbial communities. However, little is known about their co-occurring viruses. Herein, we identify 4,560 viral Operational Taxonomic Units (vOTUs) from six viromes of three saline lakes on Qinghai-Tibet Plateau, with less than 1% that could be classified. Most of the predicted vOTUs were associated with the dominant bacterial and archaeal phyla. Virus-encoded auxiliary metabolic genes suggest that viruses influence microbial metabolisms of carbon, nitrogen, sulfur, and lipid; the antibiotic resistance mediation; and their salinity adaption. The six viromes clustered together with the ice core viromes and bathypelagic ocean viromes and might represent a new viral habitat. This study has revealed the unique characteristics and potential ecological roles of DNA viromes in the lakes of the highest plateau and established a foundation for the recognition of the viral roles in plateau lake ecosystems.

| S-EPMC8710556 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data