Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Fragilaria crotonensis strain:SAG 28.96

ABSTRACT: Genome of the freshwater diatom Fragilaria crotonensis SAG 28.96

PROVIDER: PRJNA807324 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR18042423_1.fastq.gz	Fastqsanger.gz
	SRR18042424_1.fastq.gz	Fastqsanger.gz
	SRR18042424_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

SAG/Rbx2-Dependent Neddylation Regulates T-cell Responses

Project description:We used microarrays to detail the global program of gene expression underlying SAG-dependent neddylation and identified distinct classes of disparate genes during this process.

2020-03-31 | GSE83593 | GEO

Project description:Whole-genome sequencing of freshwater diatom Synedra acus subsp. radians (Fragilaria radians)

| PRJNA764820 | ENA

KIAA0753 human fibroblasts treated with control media, Smoothened Agonist (SAG) or WNT3A

Project description:Human fibroblasts from a control or a patient with compound heterozygous variants in KIAA0753 treated with SAG or WNT3A to test responses within canonical Hedgehog or WNT signaling.

2021-08-24 | GSE182286 | GEO

Chroococcidiopsis sp. SAG 2025

Project description:Chroococcidiopsis sp. SAG 2025 Genome sequencing

| PRJNA880696 | ENA

Monoraphidium neglectum strain:SAG 48.87

Project description:Monoraphidium neglectum strain:SAG 48.87 Genome sequencing and assembly

| PRJNA221625 | ENA

Micractinium conductrix strain:SAG 241.80

Project description:Micractinium conductrix strain:SAG 241.80 Genome sequencing and assembly

| PRJNA290385 | ENA

Mesotaenium endlicherianum strain:SAG 12.97

Project description:Mesotaenium endlicherianum strain:SAG 12.97 Genome sequencing and assembly

| PRJNA543678 | ENA

Haematococcus lacustris strain:SAG 192.80

Project description:Haematococcus lacustris strain:SAG 192.80 Genome sequencing and assembly

| PRJNA487914 | ENA

Transcriptome data of Foxp3-Cre, Rbx1&Sag-deficient Treg cells from mice

Project description:Neddylation is necessary for activation of Cullin-RING Ligases (CRLs) which degrade various immune regulatory proteins. Our recent study showed that while depletion of neddylation E2-E3 pair Ube2f-Sag in regulatory T cells (Treg cells) had no obvious phenotype, the same depletion of either Ube2m or Rbx1 caused inflammation disorders with different severity. Whether these E2s or E3s compensate each other in functional regulations of Treg cells is, however, previously unknown. In this report, we generated Foxp3Cre;Ube2mfl/fl;Ube2ffl/fl or Foxp3Cre;Rbx1fl/fl;Sagfl/fl double null mice by simultaneously deletion of both neddylation E2s or E3s in Treg cells, respectively. Remarkably, Ube2m&Ube2f double null mice developed much severe autoimmune phenotypes than Ube2m-null mice, indicating Ube2m significantly compensates Ube2f in Treg cells. The minor worsen autoimmune phenotypes seen at very early stage in Rbx1&Sag double null than Rbx1-null mice, is likely due to already severe phenotypes of the later, indicating a minor compensation of Rbx1 for Sag. The RNA profiling-based analyses revealed that up- and down-regulations of few signaling pathways in Treg cells are associated with the severity of autoimmune phenotypes. Finally, severer inflammation phenotypes seen in mice with double E3-null than with double E2-null Treg cells indicate a neddylation-independent mechanism of two E3s, also known to serve as the RING component of CRLs in regulation of Treg cell fitness.

2023-08-12 | GSE237498 | GEO

Expression data from human kidney organoids treated with the Hedgehog agonist SAG

Project description:The kidney, similar to non-renal tissue, is adversely affected by increased Hedgehog signaling. We treated human kidney organoids with the Hedgehog activator SAG in order to study the effects of constitutive active Hedghog signaling on human kidney development. We used microarrays to identify gene expression changes in human kidney tissue following Hedgehog activation.

2023-06-01 | GSE205957 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data