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SENP3 and USP7 regulate Polycomb-rixosome interactions and silencing functions

ABSTRACT: SENP3 and USP7 regulate Polycomb-rixosome interactions and silencing functions

PROVIDER: PRJNA808416 | ENA |

REPOSITORIES: ENA

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SENP3 and USP7 regulate Polycomb-rixosome interactions and silencing functions(RNA-seq)

Project description:SENP3 deSUMOylates Rixosome and USP7 deubiquitylates PRC. This can protect Rixosome and PRC1 from displacement from chromatin

2023-04-08 | GSE197028 | GEO

SENP3 and USP7 regulate Polycomb-rixosome interactions and silencing functions(ChIP-seq)

Project description:SENP3 deSUMOylates Rixosome and USP7 deubiquitylates PRC. This can protect Rixosome and PRC1 from displacement from chromatin

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SENP3 and USP7 regulate Polycomb-rixosome interactions and silencing functions(RNA-seq)

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Project description:SENP3 and USP7 regulate Polycomb-rixosome interactions and silencing functions(ChIP-seq)

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SENP3 and USP7 regulate Polycomb-rixosome interactions and silencing functions

Project description:This SuperSeries is composed of the SubSeries listed below.

2023-04-08 | GSE197030 | GEO

USP7 cooperates with SCML2 to regulate the activity of PRC1

Project description:In this experiment, we sought to identify the distribution of USP7 on chromatin relative to other PRC1 components ChIP-seq for USP7 in 293T-REx cells

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USP7 regulates the ncPRC1 Polycomb axis to stimulate genomic H2AK119ub1 deposition uncoupled from H3K27me3 [ChIP-seq]

Project description:Ubiquitin-specific protease 7 (USP7) has been implicated in cancer progression and neurodevelopment. However, its molecular targets remain poorly characterized. We combined quantitative proteomics, transcriptomics, and epigenomics to define the core USP7 network. Our multi-omics analysis reveals USP7 as a control hub that links genome regulation, tumor suppression, and histone H2A ubiquitylation (H2AK119ub1) by noncanonical Polycomb-repressive complexes (ncPRC1s). USP7 strongly stabilizes ncPRC1.6 and, to a lesser extent, ncPRC1.1. Moreover, USP7 represses expression of AUTS2, which suppresses H2A ubiquitylation by ncPRC1.3/5. Collectively, these USP7 activities promote the genomic deposition of H2AK119ub1 by ncPRC1, especially at transcriptionally repressed loci. Notably, USP7-dependent changes in H2AK119ub1 levels are uncoupled from H3K27me3. Even complete loss of the PRC1 catalytic core and H2AK119ub1 has only a limited effect on H3K27me3. Besides defining the USP7 regulome, our results reveal that H2AK119ub1 dosage is largely disconnected from H3K27me3.

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(RNA-seq) USP7 regulates the ncPRC1 Polycomb axis to stimulate genomic H2AK119ub1 deposition uncoupled from H3K27me3

2022-11-08 | GSE193019 | GEO