Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Millimeter Waves Modulate the Transcriptome in Human Fibroblasts

ABSTRACT: Millimeter Waves Modulate the Transcriptome in Human Fibroblasts

PROVIDER: PRJNA809696 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR18114310_1.fastq.gz	Fastqsanger.gz
	SRR18114310_2.fastq.gz	Fastqsanger.gz
	SRR18114311_1.fastq.gz	Fastqsanger.gz
	SRR18114311_2.fastq.gz	Fastqsanger.gz
	SRR18114312_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

Millimeter Waves Modulate the Transcriptome in Human Fibroblasts

Project description:Millimetre-wave (MMW) frequencies of the electromagnetic spectrum are increasingly being adopted in modern technologies including mobile communications, networking, and security screening. These frequencies are absorbed by the outer layers of the skin, however the biological effects are not well characterised. Thus, as emerging technologies increase human exposure, understanding the effects of MMWs on biological material and cell biology in the skin is critical in determining safe exposure levels. Here, we report on the exposure of primary human dermal fibroblasts to MMWs; we find that the radiation triggers genomic and transcriptomic alterations. In particular, repeated 60 GHz MMW exposures at 2.6 mW cm-2, 46.8 J cm-2 doses, trigger a physiological response in human fibroblasts distinct from conventional cytokine-induced stimulation. Our results show that high dose MMWs induce non-thermal transcriptomic alterations with simultaneous changes in DNA structural dynamics including formation of G-quadruplex and i-motif secondary structures, but not DNA damage.

2022-04-15 | GSE197295 | GEO

Transcriptional landscape of human keratinocyte models exposed to 60-GHz millimeter-waves

Project description:Transcriptional landscape of human keratinocyte models exposed to 60-GHz millimeter-waves

| PRJNA982800 | ENA

ADDITIVE EFFECTS OF MILLIMETER WAVES AND 2 DEOXYGLUCOSE CO-EXPOSURE ON THE HUMAN KERATINOCYTE TRANSCRIPTOME

Project description:To evaluate the effect of millimeter waves (MMW) exposure on the gene expression, we have employed whole genome microarray expression profiling. Neonatal primary Keratinocyte cells pooled from 3 healthy donors were exposed ex vivo, by 60.4 GHz-MMW, at an incident power density (IPD) of 20 mW/cm² (3 hours of treatment in athermic condition).No modification of keratinocyte transcriptome was observed. Considering that MMW could also impact the cell metabolism, we assessed then effect of glycolysis inhibitor 2 deoxyglucose treatment (2dG, 20 mM during 3 hours) in association with MMW co-exposure. 2dG treatment induces a high modification of the transcriptome (632 coding genes). Genes affected in their expression are linked with transcriptional repression, cellular communication and endoplasmic reticulum homeostasis. The MMW/2dG co-exposition induced a slight modification of cell transcriptome, which reflects the capacity of MMW to interfere with bioenergetic stress response. After RT-PCR validation, 6 genes (SOCS3, SPRY2, TRIB1, FAM46A, CSRNP1 and PPP1R15A) were confirmed as sensitive to MMW exposure during 2dG treatment.

2016-09-20 | GSE83829 | GEO

SK13_Wheat: Proteomic and biological analyses reveal the effect on growth under flooding stress of wheat irradiated with millimeter waves.

Project description:Proteomic and biological analyses reveal the effect on growth under flooding stress of wheat irradiated with millimeter waves

2024-08-29 | PXD031669 | JPOST Repository

Transcriptional landscape of human keratinocyte models exposed to 60-GHz millimeter-waves

Project description:Purpose: The use of millimeter waves (MMW) will likely grow exponentially in the coming years due to their future utilization in high-speed telecommunications. The question of the possible biological effects of these frequencies has been raised, and in the present study, we aimed to explore, throw an innovating RNA sequencing approach known as Bulk RNA Barcoding sequencing (BRB-seq), the difference in gene expression under exposure. Methods: Tree main exposure scenario were explored. The first one aim to compare the cellular response of two primary culture of keratinocytes (HEK and NHEK) and one keratinocyte derivate cell line (HaCaT) exposed to MMW. The second scenario explore the dose effect of gradient of incident power density on gene expression in cell line. The last one explore the exposure time at the new exposure limit for the general population. Results: Our data shows that gene expression is quite different between the cellular models used, which validates the method used. However, the exposure scenarios demonstrates that the main effect was the heat effect associated with high power MMW. Some genes were also altered by exposure. Altered expression of 2 genes was confirmed with qRT–PCR. Conclusions: These results show that acute exposure to MMW has low effect on gene expression.

2024-06-20 | GSE234710 | GEO

SK11: Proteomic and biological analyses to reveal the effect on growth of chickpea irradiated with millimeter waves under flooding stress

Project description:Proteomic and biological analyses to reveal the effect on growth of chickpea irradiated with millimeter waves under flooding stress

2023-08-28 | PXD024561 | JPOST Repository

Cancer-associated fibroblasts actively compress cancer cells and modulate mechanotransduction

Project description:Cancer-associated fibroblasts actively compress cancer cells and modulate mechanotransduction

| PRJNA1015154 | ENA

Proteomics of exosome derived from human dental pulp stem cells, human venous endothelial cells and human fibroblasts

Project description:Proteomics of exosomes derived from human dental pulp stem cells, human venous endothelial cells and human fibroblasts

2024-10-25 | PXD057181 |

Multiple waves of transcriptome changes during extended hypoxic induction in human pulmonary microvascular endothelial cells

Project description:We profile the expression pattern of human pulmonary microvascular endothelial cells (HPMECs) at different time points of hypoxic stress. Through mRNA-seq, we identify functional waves of minor gene up-regulation at 8 and 24h hypoxia exposure followed by a massive wave of transcriptional activation after 48 hours. By weighted gene co-expression network analysis, we identify hub genes that likely play central roles in hypoxia transcription program. Strikingly, these hub genes included a prominent group of lincRNAs, suggesting non-coding RNAs may also have pivotal roles in the hypoxia regulatory circuit. HPMECs share a core hypoxia signature profile, but with some notably differences, indicating a portion of HPMECs hypoxia response is cell-specific. Collectively, our study comprehensive surveys the hypoxia transcriptome, and provides insight into the temporal dynamics of hypoxia transcriptional response. Time-course expression profiling of HPMECs exposed to hypoxia

2015-12-31 | E-GEOD-53510 | biostudies-arrayexpress

Controlling human organoid symmetry breaking reveals signaling gradients drive segmentation clock waves

Project description:Axial development of mammals is a dynamic process involving several coordinated morphogenetic events, including axial elongation, somitogenesis, and neural tube formation. To gain insight into the signals control the dynamics of human axial morphogenesis, we generated hundreds of axially elongating organoids by inducing anteroposterior symmetry breaking of spatially coupled epithelial cysts derived from human pluripotent stem cells. Each organoid was composed of a neural tube flanked by presomitic mesoderm sequentially segmented into somites. Periodic activation of the somite differentiation gene MESP2 coincided in space and time with anteriorly traveling segmentation clock waves in the presomitic mesoderm of the organoids, recapitulating critical aspects of somitogenesis. Through timed perturbations of organoids, we demonstrated that FGF and WNT signaling play distinct roles in axial elongation and somitogenesis and that FGF signaling gradients drive the segmentation clock waves. By generating and perturbing organoids that robustly recapitulate the architecture and dynamics of multiple axial tissues in human embryos, this work offers a means to dissect complex mechanisms underlying human embryogenesis.

2022-12-12 | GSE220563 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data