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Identification of NAC094-targeted genes using DNA affinity purification sequencing (DAP-seq)

ABSTRACT: Identification of NAC094-targeted genes using DNA affinity purification sequencing (DAP-seq)

PROVIDER: PRJNA810032 | ENA |

REPOSITORIES: ENA

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Identification of NAC094-targeted genes using DNA affinity purification sequencing (DAP-seq)

Project description:To identify binding sites and nodule SAGs that are directly targeted by NAC094, we used DAP-seq, which allows the capture of the NAC094 regulatory targets at the whole-genome scale. A total of 2,819 binding peaks corresponding to 2,721 genes were identified from two repeats of the DAP-seq experiment.

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Project description:In this study, we use DNA affinity purification sequencing to identiy genome-wide binding of LFY transcription factor, a master regulator of flower development in Arabidopsis. We generated two sets of data, one using genomic DNA from plant tissue, thus retain DNA methylation, as probe for DNA affinity purification (DAP-seq dataset), and the other using PCR amplified genomic DNA (without DNA methylation; AmpDAP-seq dataset).

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The DNA affinity purification DAP-Seq assay [ChIP-seq]

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Project description:sequential DNA affinity purification sequencing (seq-DAP-seq) data of SEP3-AGAPI

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Mapping genome-wide binding profile of ChCUC1 by DNA Affinity Purification sequencing (DAP-seq)

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sequential DNA affinity purification sequencing (seq-DAP-seq) data of MADS SEP3-AG tetramerization mutants.

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Affinity purification of ribosomes and associated RNAs from stress-treated cells using tagged Rpl16a and Rpl16b

Project description:This SuperSeries is composed of the following subset Series: GSE13653: Affinity purification of ribosomes and associated RNAs from stress-treated cells GSE13654: Affinity purification of ribosomes and associated RNAs using tagged Rpl16a and Rpl16b Refer to individual Series

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