Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Soil, Japanese beetle

ABSTRACT: Soil, Japanese beetle Raw sequence reads

PROVIDER: PRJNA811171 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR18185937.fastq.gz	Fastqsanger.gz
	SRR18185938.fastq.gz	Fastqsanger.gz
	SRR18185939.fastq.gz	Fastqsanger.gz
	SRR18185940.fastq.gz	Fastqsanger.gz
	SRR18185941.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 63

Similar Datasets

Soil, Japanese beetle

Project description:Japanese beetle - 16S rRNA project

| PRJNA798077 | ENA

beetle metagenome

Project description:beetle metagenome Raw sequence reads

| PRJNA331096 | ENA

beetle metagenome

Project description:beetle metagenome Raw sequence reads

| PRJNA563849 | ENA

Proteomic analysis of untanned and tanned elytra from Japanese rhinoceros beetle

Project description:To identify changes in protein composition during the developmental process of the elytra in Japanese rhinoceros beetle, proteomic analyses of untanned and tanned elytra were performed.

2021-12-31 | PXD025045 | JPOST Repository

Beetle species

Project description:The bean leaf beetle, Cerotoma trifurcata and the bconvergent lady beetle, Hippodamia convergens Raw sequence reads

| PRJNA384409 | ENA

Dung beetle enclosure soil experiment in Paicines, CA, soil and dung samples

Project description:Dung beetle enclosure soil experiment in Paicines, CA, soil and dung samples Raw sequence reads

| PRJNA993284 | ENA

red turpentine beetle gut microbiota

Project description:red turpentine beetle gut microbiota Raw sequence reads

| PRJNA704600 | ENA

RNA-Seq Analysis to confirm Different Transcriptomic Profiles of Soil-Derived Functional Module Consortia.

Project description:Purpose: Deconstructing the soil microbiome into reduced-complexity functional modules represents a novel method of microbiome analysis. The goals of this study are to confirm differences in transcriptomic patterns among five functional module consortia. Methods: mRNA profiles of 3 replicates each of functional module enrichments of soil inoculum in M9 media with either 1) xylose, 2) n-acetylglucosamine, 3) glucose and gentamycin, 4) xylan, or 5) pectin were generated by sequencing using an Illumina platform (GENEWIZ performed sequencing). Sequence reads that passed quality filters were aligned to a soil metagenome using Burrows Wheeler Aligner. Resulting SAM files were converted to raw reads using HTSeq, and annotated using Uniref90 or EGGNOG databases. Results: To reduce the size of the RNA-Seq counts table and increase its computational tractability, transcripts containing a minimum of 75 total counts, but no more than 3 zero counts, across the 15 samples were removed. The subsequent dataset was normalized using DESeq2, resulting in a dataset consisting of 6947 unique transcripts across the 15 samples, and 185,920,068 reads. We identified gene categories that were enriched in a sample type relative to the overall dataset using Fisher’s exact test. Conclusions: our dataset confirms that the functional module consortia generated from targeted enrichments of a starting soil inoculum had distinct functional trends by enrichment type.

2020-01-14 | GSE143587 | GEO

Morus alba Raw protein sequence reads

Project description:Morus alba L. Raw protein sequence reads and sequence

2024-02-08 | PXD049451 |

Takifugu rubripes breed:Japanese Pufferfish

Project description:Takifugu rubripes breed:Japanese Pufferfish Raw sequence reads

| PRJNA356921 | ENA