Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: MeDIP-seq of Duroc and Meishan boars

PROVIDER: PRJNA811339 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR18240851.fastq.gz	Fastqsanger.gz
	SRR18240851_1.fastq.gz	Fastqsanger.gz
	SRR18240851_2.fastq.gz	Fastqsanger.gz
	SRR18240852.fastq.gz	Fastqsanger.gz
	SRR18240852_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 18

Similar Datasets

Project description:sRNA-seq data of Duroc and Meishan boars

| PRJNA657937 | ENA

Project description:WGS data of Duroc boars

| PRJNA712489 | ENA

Differences in gene expression profiles for subcutaneous adipose, liver, and skeletal muscle tissues between Meishan and Landrace pigs with different backfat thicknesses

Project description:Backfat thickness is one of the most important traits of commercially raised pigs. Meishan pigs are renowned for having thicker backfat than Landrace pigs. To examine the genetic factors responsible for the differences, we first produced female crossbred pig lines by mating Landrace (L) × Large White (W) × Duroc (D) females (LWD) with Landrace (L) or Meishan (M) boars (i.e., LWD × L = LWDL for Landrace offspring and LWD × M = LWDM of the Meishan offspring). We confirmed that LWDM pigs indeed had a thicker backfat than LWDL pigs. Next, we performed gene expression microarray analysis (in both genetic lines) to examine differentially expressed genes (DEGs) in energy metabolism-related tissues, subcutaneous adipose (fat), liver, and longissimus dorsi muscle tissues. We analyzed the annotation of DEGs (2-fold cutoff) to functionally categorize them by Gene Ontology and Kyoto Encyclopedia of Genes and Genomes pathways. The number of DEGs in muscle tissues of both lines was much less than that in fat and liver tissues, indicating that DEGs was much lesser in muscle tissues (in both genetic lines) than in fat and liver tissues, thus indicating that DEGs in muscle tissues may not contribute much to differences in backfat thickness. In contrast, several genes related to muscle (in fat tissue) and fatty acid and glucose metabolism (in the liver) were more upregulated in LWDM pigs than LWDL pigs, indicating that those DEGs might be responsible for differences in backfat thickness. The different genome-wide, gene expression profiles in the fat, liver, and muscle tissues between breeds can provide useful information for pig breeders.

2018-09-06 | GSE97711 | GEO

Using the Porcine SNP60k array to discover copy number variations in high and low fertility boars

Project description:The raw data from the Porcine SNP60k array was used to discover copy number variations in high and low fertile breeding boars. Analysis was done in SNP and Variation Suite ver. 7.7.8. (SVS, GoldenHelix Inc.) Results were published in Revay et al., BMC Genomics 2015 Arrays were performed on 13 Landrace, 3 Duroc and 20 Yorkshire boars of high and low fertility by the service provider DNA Landmarks.

2015-02-21 | E-GEOD-66170 | biostudies-arrayexpress

Sus scrofa breed:Duroc

Project description:WGS of 5 Duroc boars (Lipgen)

| PRJNA624870 | ENA

Gene expression during testis development in Duroc boars

Project description:The aim of the study was to combine understanding between a timeline for molecular and macroscopic functions in the testis of the Duroc boar. To achieve this, cluster and pathway analysis was performed based on microarray transcripts from four pubertal timepoints with known steroidogenic status and known morphological maturation status. Gene expression study of testes biopsies from Duroc boars, taken at age 12, 16, 20 and 27 weeks of age, using in-house printed porcine two-colour cDNA microarrays.

2013-09-01 | E-GEOD-39322 | biostudies-arrayexpress

Project description:Low coverage sequencing data of Duroc boars

| PRJNA681437 | ENA

Project description:Low coverage sequencing data of Duroc boars

| PRJEB44569 | ENA

Sus scrofa

Project description:Gene expression during testis development in Duroc boars

| PRJNA170758 | ENA

Transcriptome profiling of porcine testis reveals genes related to sperm hyperactive motility

Project description:The aim of this study was to use RNA sequencing to investigate gene expression differences in testis tissue from Landrace and Duroc boars with high and low levels of sperm hyperactive motility. Twelve gene ontology terms were enriched in the day 0 contrast in Landrace and the most significant term was “extracellular exosome”. For the 96 hours storage contrast in Landrace, seven gene ontology terms were enriched and the most significant one was “extracellular space”.

2020-05-08 | GSE141541 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data