Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Genomic monitoring of the critically endangered kakapo by real-time nanopore sequencing of environmental DNA

PROVIDER: PRJNA812072 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR18208523_1.fastq.gz	Fastqsanger.gz
	SRR18208524_1.fastq.gz	Fastqsanger.gz
	SRR18208525_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 3 of 3

Similar Datasets

Project description:Genomic monitoring of the critically endangered kakapo using targeted nanopore sequencing of environmental DNA

| PRJNA806467 | ENA

Project description:Monitoring Endangered Freshwater Biodiversity by Environmental DNA

| PRJEB2740 | ENA

Nanopore sequencing and data analysis for base-resolution genome-wide 5-methylcytosine profiling

Project description:Whole-genome bisulfite sequencing (WGBS) is currently the gold standard for DNA methylation (5-methylcytosine, 5mC) profiling, however the destructive nature of sodium bisulfite results in DNA fragmentation and subsequent biases in sequencing data. Such issues have led to the development of bisulfite-free methods for 5mC detection. Nanopore sequencing is a long read non-destructive approach that directly analyzes DNA and RNA fragments in real time. Recently, computational tools have been developed that enable base-resolution detection of 5mC from Oxford Nanopore sequencing data. In this chapter we provide a detailed protocol for preparation, sequencing, read assembly and analysis of genome-wide 5mC using Nanopore sequencing technologies.

2021-12-03 | GSE179673 | GEO

ORG.one Project

Project description:Critically Endangered Species from Indonesia

| PRJEB73584 | ENA

Homo sapiens

Project description:Real-time Monitoring of Cisplatin Toxicity on Cancer Cells

| PRJNA139373 | ENA

Long-read sequencing for cell-free DNA analysis (mouse)

Project description:In this study, we compared the two long-read sequencing platforms, namely the single-molecule real-time sequencing by Pacific Biosciences and nanopore sequencing by Oxford Nanopore Technologies, for the analysis of cell-free DNA from plasma. Artificial mixtures of sonicated human and mouse DNA at different sizes were sequenced with the two platforms.

| EGAS00001006329 | EGA

Pongo pygmaeus

Project description:Bornean orangutan a critically endangered hominoid

| PRJNA28639 | ENA

Project description:Determining Pathogenic Gut Microbiome of Critically Endangered Malayan Tiger DNA Metabarcoding

| PRJNA896752 | ENA

Project description:Real-Time, Direct Classification of Nanopore Signals with SquiggleNet

| PRJNA682390 | ENA

Transcriptomic profiling permits the identification of pollutant sources and effects in ambient water samples

Project description:The delta smelt (Hypomesus transpacificus) is a pelagic fish species endemic to the Sacramento-San Joaquin Estuary in Northern California, listed as endangered under both the USA Federal and Californian State Endangered Species Acts and acts as an indicator of ecosystem health in its habitat range. Interrogative tools are required to successfully monitor effects of contaminants upon the delta smelt, and to research potential causes of population decline in this species. We used microarray technology to investigate genome-wide effects in 47-day old larvae after a 7-day exposure to ambient water samples from the Sacramento River at a monitoring field station (Hood) situated 8 miles downstream of the Sacramento regional Wastewater Treatment Plant. Genomic assessments were carried out on surviving organisms and contrasted to laboratory controls.

2012-09-20 | GSE40991 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data