Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Long-read metagenomic sequencing of anaerobic digestion communities

PROVIDER: PRJNA814623 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR18290766_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 1 of 1

Similar Datasets

Synergistic effect of short- and long-read sequencing on functional meta-omics

Project description:Evaluation of short-read-only, long-read-only, and hybrid assembly approaches on metagenomic samples demonstrating how they affect gene and protein prediction which is relevant for downstream functional analyses. For a human gut microbiome sample, we use complementary metatranscriptomic, and metaproteomic data to evaluate the metagenomic-based protein predictions.

2022-02-17 | PXD025505 | Pride

Project description:Metagenomic sequencing of anaerobic digestion

| PRJNA853387 | ENA

Project description:Rainwater Metagenomic Long-Read Sequencing

| PRJNA763902 | ENA

Methanothrix

Project description:Metagenomic sequencing of anaerobic digestion reactors

| PRJNA1116819 | ENA

anaerobic digester metagenome

Project description:Anaerobic digestion Metagenomic assembly(T)

| PRJNA325865 | ENA

anaerobic digester metagenome

Project description:Anaerobic digestion (biogas) Metagenomic assembly

| PRJNA283298 | ENA

Project description:Metagenomic analysis during anaerobic digestion

| PRJNA916979 | ENA

anaerobic digester metagenome

Project description:Anaerobic digestion Metagenomic assembly(T)

| PRJNA379213 | ENA

Shotgun metaproteomic profiling of biomimetic anaerobic digestion processes treating sewage sludge

Project description:Two parallel anaerobic digestion lines were designed to match a "bovid-like" digestive structure. Each of the lines consisted of two Continuous Stirred Tank Reactors placed in series and separated by an acidic treatment step. The first line was inoculated with industrial inocula whereas the second was seeded with cow digestive tract contents. After three month of continuous sewage sludge feeding, samples were recovered for shotgun metaproteomic and DNA-based analysis. Strikingly, protein inferred and 16S rDNA tags based taxonomic community profiles were not fully consistent. Principal Component analysis however revealed a similar clustering pattern of the samples, suggesting that reproducible methodological and/or biological factors underlie this observation. The performances of the two digestion lines did not differ significantly and the cow derived inocula did not establish in the reactors. A low throughput metagenomic dataset (3.4x106 reads, 1.1 Gb) was also generated for one of the samples. It allowed a substantial increase of the analysis depth (increase of the spectral identification rate). For the first time, a high level of proteins expressed by members of the "Candidatus Competibacter" group is reported in an anaerobic digester, a key microbial player in environmental bioprocess communities.

2015-08-12 | PXD002420 | Pride

Project description:Metagenomic sequencing of food waste anaerobic digestion

| PRJNA787664 | ENA