Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Tulipa gesneriana

ABSTRACT: Tulipa gesneriana 'Queen of Night' Raw sequence reads

PROVIDER: PRJNA816321 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR18335111_subreads.fastq.gz	Fastqsanger.gz

Items per page:

1 - 1 of 1

Similar Datasets

Tulipa gesneriana

Project description:Tulipa gesneriana Raw sequence reads

| PRJNA820996 | ENA

Tulipa gesneriana

Project description:Tulipa gesneriana Raw sequence reads

| PRJNA815917 | ENA

Tulipa gesneriana

Project description:Tulipa gesneriana Raw sequence reads

| PRJNA780346 | ENA

Tulipa gesneriana

Project description:Tulipa gesneriana overview

| PRJNA327883 | ENA

Tulipa gesneriana cultivar:Dynasty

Project description:Tulipa gesneriana cultivar:Dynasty Raw sequence reads

| PRJNA309115 | ENA

Transcriptomic network of Tulipa gesneriana during petal senescence

Project description:Purpose: We aimed to dissect transcriptomic responses of Tulipa gesneriana during petal senescence and characterize function of senescence related genes. Methods: A total amount of 3 µg RNA was used for generation of sequencing libraries using NEBNext® Ultra™ RNA Library Prep Kit for Illumina® (NEB, USA) following manufacturer’s recommendations and index codes were added to attribute sequences to each sample. After cluster generation, the library preparations were sequenced on an Illumina Hiseq platform and 125 bp/150 bp paired-end reads were generated. Clean reads were obtained by removing low quality reads, reads containing adapter and ploy-N from raw data. At the same time, Q20, Q30 and GC content the clean data were calculated. Index of the Arabidopsis genome was built using Bowtie v2.2.3 and paired-end clean reads were aligned to the reference genome using TopHat v2.0.12. HTSeq v0.6.1 was used to count the reads numbers mapped to each gene. And then FPKM (Fragments Per Kilobase of transcript sequence per Millions base pairs sequenced) of each gene was calculated based on the length of the gene and reads count mapped to this gene. Differential expression analysis between each two different stages was performed using the DESeq R package (1.18.0). Results:In total, 15 samples with three biological replicates per stage combination were used for RNA sequencing analysis. At least 6 G clean bases were generated for each sample. Comparative analysis identified genes involved in flower development and/or fllower senescence.

2022-11-02 | GSE136183 | GEO

Tulipa gesneriana

Project description:Tulipa gesneriana Transcriptome or Gene expression

| PRJNA682857 | ENA

Tulipa gesneriana cultivar:Dynasty

Project description:Tulipa gesneriana transcriptome time series floral induction

| PRJNA327809 | ENA

Tulipa gesneriana cultivar:Dynasty

Project description:Tulipa gesneriana Transcriptome_ flowering vs non-flowering daugther bulbs

| PRJNA777886 | ENA

Transcriptomic network of Tulipa gesneriana during petal senescence

Project description:Transcriptomic network of Tulipa gesneriana during petal senescence