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Generation of human kidney organoids from urine cells (RNA-seq)

ABSTRACT: Generation of human kidney organoids from urine cells (RNA-seq)

PROVIDER: PRJNA817166 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR21678604_1.fastq.gz	Fastqsanger.gz
	SRR21678604_2.fastq.gz	Fastqsanger.gz
	SRR21678605_1.fastq.gz	Fastqsanger.gz
	SRR21678605_2.fastq.gz	Fastqsanger.gz
	SRR21678606_1.fastq.gz	Fastqsanger.gz

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Generation of human kidney organoids from urine cells (RNA-seq)

Project description:Kidney organoids are ideal models to study the complex process of human kidney development. Here we report the generation of functional kidney organoids by reprogramming human urine epithelial cells (hUCs). RNA-seq and ATAC-seq revealed the three-stage process of the 2D U-iRO induction. Single cell RNA-seq further reveals the cell types in 2D and 3D organoids, 2D U-iRO dominated with mesenchyme and 3D U-iRO with tubule.

2022-10-18 | GSE198839 | GEO

Generation of human kidney organoids from urine cells

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Generation of human kidney organoids from urine cells (scRNA-Seq)

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Generation of human kidney organoids from urine cells (ATAC-seq)

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Generation of human kidney organoids from urine cells

Project description:Generation of human kidney organoids from urine cells

| PRJNA817161 | ENA

Generation of human kidney organoids from urine cells (ATAC-seq)

Project description:Generation of human kidney organoids from urine cells (ATAC-seq)

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Generation of human kidney organoids from urine cells (scRNA-Seq)

Project description:Generation of human kidney organoids from urine cells (scRNA-Seq)

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Generation of intestinal organoids from human urine cells

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The nephrotxin Puromycin aminonucleoside induces injury in kidney organoids differentiated from human urine SIX2-positive stem cell derived induced pluripotent stem cells.

Project description:Kidney diseases including acute kidney injury (AKI) and chronic kidney disease (CKD), which can progress to end stage renal disease (ESRD), are a worldwide health burden. Organ trans-plantation or kidney dialysis are the only effective available therapeutic tools. Therefore, in vitro models of kidney diseases and the development of prospective therapeutic means are highly demanded. Within the kidney, the glomeruli are involved in blood filtration and waste excre-tion, and are easily affected by changing cellular conditions. Puromycin aminonucleoside (PAN) is a nephrotoxin, which can be harnessed for imitating acute glomerular damage and modelling of glomerular disease. For this reason, we generated kidney organoids from three iPSC lines and treated these with PAN in order to induce kidney injury. Morphological observations re-vealed disruption of glomerular and tubular structures within the kidney organoids upon PAN treatment, which were confirmed by transcriptome analyses. Subsequent analyses revealed an upregulation of immune response as well as inflammatory and cell death-related processes. We concluded that treatment of iPSC-derived kidney organoids with PAN induces kidney injury mediated an intertwined network of inflammation, cytoskeletal re-arrangement, DNA damage, apoptosis and cell death. Furthermore, urine stem cell-derived kidney organoids can be used for modelling of kidney-associated diseases and drug discovery.

2022-03-04 | GSE186823 | GEO

The immunogenicity of human kidney organoids

Project description:Safety issues of human iPSC-derived kidney organoids as a regenerative therapy need to be evaluated. Therefore, we studied the immunogenicity of human iPSC-derived kidney organoids. We subcutaneously implanted kidney organoids in immune-deficient IL2Ry-/-RAG2-/- mice for 1 month and hereafter performed adoptive transfer of healthy allogeneic human PBMC. We used single cell RNA sequencing (scRNA-seq) to analyze the diversity of kidney organoid cells and immune cell profiles. We investigated whether innate and adaptive immune cells invade kidney organoids, evoke an immune response, and influence the kidney organoid differentiation and functional capacity. Understanding the immunogenicity of kidney organoids will advance studies in the applicability of kidney organoids for regenerative medicine. Furthermore, it can serve as an in-vivo transplantation model to study solid organ transplantation.

2022-08-25 | GSE211803 | GEO

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