Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

MATR3-binding RNAs in AML12 cells [RIP-Seq]

ABSTRACT: MATR3-binding RNAs in AML12 cells [RIP-Seq]

PROVIDER: PRJNA823726 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR18646065_1.fastq.gz	Fastqsanger.gz
	SRR18646065_2.fastq.gz	Fastqsanger.gz
	SRR18646066_1.fastq.gz	Fastqsanger.gz
	SRR18646066_2.fastq.gz	Fastqsanger.gz
	SRR18646067_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 8

Similar Datasets

MATR3-binding RNAs in AML12 cells [RIP-Seq]

Project description:We performed RNA binding protein immunoprecipitation (RIP) assay with anti-IgG/anti-MATR3 antibody. The RNA libraries were constructed using rib-off and strand-specific kits. Next-generation sequencing (NGS) were performed to analyze MATR3-binding RNAs.

2023-06-28 | GSE200244 | GEO

MATR3-binding RNAs in ES cells [RIP-Seq]

2023-06-28 | GSE225501 | GEO

MATR3-binding RNAs in ES cells [RIP-Seq]

Project description:MATR3-binding RNAs in ES cells [RIP-Seq]

| PRJNA935806 | ENA

The nuclear matrix protein MATR3 maintains higher-order chromatin architecture [Hi-C]

Project description:The chromatin structure in eukaryotic nucleus is highly ordered and organized in hierarchical frameworks. We performed Hi-C assay in WT and MATR3-depleted AML12 cells to reveal the MATR3's role in AML12 cells.

2023-06-28 | GSE200243 | GEO

Genome-wide maps of chromatin state in AML12 cells [ChIP-Seq]

Project description:We performed chromatin Immunoprecipitation (ChIP) assay followed by next-generation sequencingwith H3K9me3 and H3K27ac antibodies in WT AML12 cells to investigate the epigenetic landscape of AML12. And we performed ChIP-seq using H3K27me3 antibody in WT and MATR3-depleted AML12 cells.

2023-06-28 | GSE200241 | GEO

Genome-wide maps of chromatin state in AML12 cells [SAMMY-Seq]

Project description:We performed SAMMY (Sequential Analysis of Macro-Molecules accessibilitY) chromatin fraction assay followed by next-generation sequencing in WT and MATR3-depleted AML12 cells to investigate the epigenetic landscape of AML12.

2023-06-28 | GSE228141 | GEO

RIP-seq analysis of Usp39 binding sites in mouse AML12 cell line

Project description:RIP-seq analysis of Usp39 binding sites in mouse AML12 cell line

| PRJNA881956 | ENA

The transcriptome profile before and after knocking-down of nuclear matrix protein MATR3 [ssRNA-Seq]

Project description:We performed RNA-seq assay in WT and MATR3-depleted AML12 cells to reveal the trscriptiome associated with MATR3 protein. The libraries were constructed by poly-A enriched and strand-specific kits.

2023-06-28 | GSE200245 | GEO

High throughput sequencing for YTHDC1 binding RNAs [RIP-seq]

Project description:High throughput sequencing for YTHDC1 binding RNAs [RIP-seq]

| PRJNA610618 | ENA

MATR3

Project description:MATR3

| PRJNA823719 | ENA