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Arabidopsis thaliana breed:Col-0

ABSTRACT: Arabidopsis thaliana ecotype Col-0 double-stranded RNA treatment against the chalcone synthase gene

PROVIDER: PRJNA827691 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR18831561.fastq.gz	Fastqsanger.gz
	SRR18831562.fastq.gz	Fastqsanger.gz
	SRR18831563.fastq.gz	Fastqsanger.gz
	SRR18831564.fastq.gz	Fastqsanger.gz
	SRR18831565.fastq.gz	Fastqsanger.gz

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Arabidopsis buds: ahl16 vs. Col-0

Project description:Transcriptional profiling of Arabidopsis buds comparing ahl16 mutants with wild type (Col-0 ecotype). Goal was to determine the differential expression genes between the buds of mutant and wild type.

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Whole genome bisulfite sequencing of five-week-old Arabidopsis thaliana (ecotype Col-0) plants from water and jasmonic acid treated seedlings.

Project description:Treatment of Arabidopsis thaliana (ecotype Col-0) seedlings with jasmonic acid (JA) elicits long-term induced resistance (IR) against the chewing herbivore Spodoptera littoralis. We used whole genome bisulfite-seq to profile the methylome associated with this long-lasting JA-IR.

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Total RNA sequencing of progenies of Col-0 grafted on msh1; Col-0 grafted on dcl2,3,4,msh1; Col-0 grafted on Col-0 in Arabidopsis [msh1_graft_leaf_RNA-seq]

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Transcription profiling of Arabidopsis elf self experiment Col-0 vs Col-0 samples performed at MPI

Project description:A dye swap experiment to compare Arabidopsis thaliana ecotype Col-0 grown to stage 1.04 (Boyes scale) at VIB, Plant systems biology, Gent, Belgium with Arabidopsis thaliana ecotype Col-0 grown to stage 1.04 (Boyes scale) at FU Berlin.

2005-01-01 | E-CAGE-9 | biostudies-arrayexpress

Long-lasting effect of jasmonic acid (JA) seedling treatment on the transcriptional response to JA challenge of five-week-old Arabidopsis thaliana (ecotype Col-0).

Project description:Treatment of Arabidopsis thaliana (ecotype Col-0) seedlings with jasmonic acid (JA) elicits long-term induced resistance (IR) against the chewing herbivore Spodoptera littoralis. We used RNA-seq to profile the transcriptional changes associated with this long-lasting JA-IR.

2022-11-07 | GSE163270 | GEO

Bisulfite (methylome) sequencing of progenies of Col-0 grafted on msh1; Col-0 grafted on dcl2,3,4,msh1; Col-0 grafted on Col-0; msh1 mutant; dcl2,3,4,msh1 quadruple mutant in Arabidopsis [msh1_graft_BS-seq]

Project description:Col-0 floral stem was grafted on the msh1 mutant (Col-0/msh1); on the dcl2,3,4,msh1 quadruple mutant (Col-0/dcl2,3,4,msh1); on Col-0 (Col-0/Col-0). Seeds were collected from the grafted Col-0 scion after grafts were established. Seed coming from the graft then were grown on the peat mix, leaf tissue was collected at the bolting and used for the bisulfite sequencing (methylome). Tissue from the msh1 mutant and dcl2,3,4,msh1 quadruple mutants used as rootstocks was similarly collected at the bolting stage and used for the bisulfite sequencing.

2020-09-20 | GSE152564 | GEO

ChIP-seq for HA-HTR5/Col-0 and Col-0 using HA antibody

Project description:To investigate the deposition of HTR5 in Arabidopsis, we analysed genome-wide HTR5 density in the wild-type Col-0 by ChIP-seq. We then performed HTR5 occupancy analysis using data obtained from ChIP-seq of 3 different plants including HA-HTR5/Col-0 and Col-0. Col-0 acted as negative control.

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Gene expression of Col, Van and reciprocal hybrids

Project description:Gene expression of Col, Van and reciprocal hybrids using double-stranded cDNA followed by bioprime random labeling, and hybridization to AtTILE1 forward array. Study on gene expression polymorphism between arabidopsis thaliana accessions Col-0 and Van-0. Study on the inheritance of gene expression in reciprocal hybrids. Keywords: cDNA hybridization

2008-04-11 | GSE8891 | GEO

Arabidopsis thaliana strain:ecotype Col-0

Project description:Arabidopsis thaliana strain:ecotype Col-0 Raw sequence reads

| PRJNA485392 | ENA