Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Genome-wide Analysis of Terpene Synthase Gene Family to Explore Candidate Genes Related to Disease Resistance in Prunus persica

PROVIDER: PRJNA828349 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR18841300_1.fastq.gz	Fastqsanger.gz
	SRR18841300_2.fastq.gz	Fastqsanger.gz
	SRR18841301_1.fastq.gz	Fastqsanger.gz
	SRR18841301_2.fastq.gz	Fastqsanger.gz
	SRR18841302_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 126

Similar Datasets

Absence of major epigenetic and transcriptomic changes accompanying the interspecific cross between peach and almond

Project description:We analysed the DNA methylation and transcription levels of transposable elements and genes in leaves of Prunus persica and Prunus dulcis and in their F1 hybrid using high-throughput sequencing tecnhologies. We can conclude that the merging of the two parental genomes in the P. persica x P. dulcis hybrid does not result in a “genomic shock” with significant changes in the DNA methylation or in the transcription.

2022-08-10 | GSE198152 | GEO

Human fecal samples from El Salvador

Project description:Putative terpene synthase ORFs

| PRJNA835076 | ENA

Transcriptomic analysis revealed genes involved in response to cold stress in Prunus sibirica

Project description:Through transcriptome sequencing analysis of clones with strong freezing resistance (338) and weak freezing resistance (28) of Prunus sibirica，a total of 6001 significantly differentially expressed genes were obtained. Among them, there are 2070 up-regulated genes and 3,931 down-regulated genes. Differential genes are compared and screened, and WRKY, NAC, bHLH, MADS, MYB, Homeobox, F-box, ZEP, SBT, ERF, CAMTA, MDH, etc. Freeze-related gene family.

2024-07-03 | GSE180451 | GEO

miRNAs have a role on Prunus persica response to topic application of PpPep2 endogenous peptide

Project description:We charactarize the regulated miRNAs of Prunus persica to preventive treatment of PpPep2 1 µM endogenous peptide. The peptide treatment was applied to leaves and we sequenced the miRNAs after 1 and 24 h using untreated plants as control. miRNA profiles were generated by deep sequencing, in triplicate, using Illumina HiSeq 2500. Differential expression analysis of annotated pre_miRNA gene biotypes was performed with R package DESeq2 v1.26.0, considering significant epression values below FDR <0.05. We obtained 117,267,647 raw reads and we identified a total of 33 differential expressed miRNAs (DEM) belonging to 18 miRNA families upon PpPep2 application, accounting for 15% of the P. persica annotated miRNAs. miRNA regulation occurs principally one day after peptide treatment. The predicted mRNA targets and function of orthologous miRNAs are compatible with a regulation of PTI-related processes. Together with the transcriptomic response of P. persica to PpPep2 described at our previous RNA-Seq (Foix et al 2021), this suggests that miRNAs would have an active role in PTI regulation at these stages.

2024-12-19 | GSE214135 | GEO

Prunus persica cultivar:Lovell

Project description:Prunus persica

| PRJNA31227 | ENA

Prunus persica

Project description:Prunus persica

| PRJNA214326 | ENA

Prunus persica x Prunus persica var. nucipersica

Project description:Prunus persica x Prunus persica var. nucipersica Map

| PRJNA156965 | ENA

Prunus persica x Prunus persica var. nucipersica

Project description:Prunus persica x Prunus persica var. nucipersica Map