Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ChIP-seq in SUNE1 cells that overexpressed CBX1

ABSTRACT: ChIP-seq in SUNE1 cells that overexpressed CBX1

PROVIDER: PRJNA830469 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR18856131_1.fastq.gz	Fastqsanger.gz
	SRR18856131_2.fastq.gz	Fastqsanger.gz
	SRR18856132_1.fastq.gz	Fastqsanger.gz
	SRR18856132_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

ChIP-seq in SUNE1 cells that overexpressed CBX1

Project description:ChIP experiment against anti-FLAG in SUNE1 cells trasfected with FLAG-CBX1 plasmid.

2023-01-04 | GSE201232 | GEO

Effect of depletion of CBX1 on gene expression of SUNE1 cells [RNA-seq]

Project description:Effect of depletion of CBX1 on gene expression of SUNE1 cells [RNA-seq]

| PRJNA826831 | ENA

Identification of ChIP-seq and RIME grade antibodies for Estrogen Receptor alpha

Project description:Estrogen Receptor alpha (ERα) is a key driver of most breast cancers, and it is the target of endocrine therapies used in the clinic to treat women with ERα positive (ER+) breast cancer. The two methods ChIP-seq (chromatin immunoprecipitation coupled with deep sequencing) and RIME (Rapid Immunoprecipitation of Endogenous Proteins) have greatly improved our understanding of ERα function during breast cancer progression and in response to anti-estrogens. A critical component of both ChIP-seq and RIME protocols is the antibody that is used to pull down the bait protein. To date, most of the ChIP-seq and RIME experiments for the study of ERα have been performed using the sc-543 antibody from Santa Cruz Biotechnology. However, this antibody has been discontinued, thereby severely impacting the study of ERα in normal physiology as well as diseases such as breast cancer and ovarian cancer. Here, we compare the sc-543 antibody with other commercially available antibodies, and we show that 06-935 (EMD Millipore) and ab3575 (Abcam) antibodies can successfully replace the sc-543 antibody for ChIP-seq and RIME experiments.

2019-03-21 | PXD012930 | Pride

RNA-seq of CPEB4-overexpressed LoVo cells

Project description:RNA-seq of CPEB4-overexpressed LoVo cells

| PRJNA780872 | ENA

H3K79me2 ChIP-seq analysis of murine AML with DOT1L overexpressed

Project description:H3K79me2 ChIP-seq analysis of murine AML with DOT1L overexpressed

| PRJNA553520 | ENA

H3K79me2 ChIP-seq and RNA-seq analysis of murine AML with DOT1L overexpressed

Project description:H3K79me2 ChIP-seq and RNA-seq analysis of murine AML with DOT1L overexpressed

| PRJNA553542 | ENA

Transcriptome profiling of Drosophila wild type and ttk-RNAi, dpn overexpressed, Nicd overexpressed and seq&Nicd overexpressed intestinal progenitor cells

Project description:Transcriptome profiling of Drosophila wild type and ttk-RNAi, dpn overexpressed, Nicd overexpressed and seq&Nicd overexpressed intestinal progenitor cells

| PRJNA542069 | ENA

miRNA-seq analysis of YAP5SA overexpressed gastric epithelial cells

Project description:miRNA-seq analysis of YAP5SA overexpressed gastric epithelial cells

| PRJNA413938 | ENA

CLIP-seq of VSV-infected HEK293T cells overexpressed PTENα

Project description:CLIP-seq of VSV-infected HEK293T cells overexpressed PTENα

| PRJNA869727 | ENA

ChIP-seq of human embryonic stem cells (hESCs) overexpressed with Monkeypox viral proteins H3L and A29L

Project description:ChIP-seq of human embryonic stem cells (hESCs) overexpressed with Monkeypox viral proteins H3L and A29L

| PRJNA1001346 | ENA