Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Bulbophyllum reptans

ABSTRACT: Bulbophyllum reptans overview

PROVIDER: PRJNA830583 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR18885542_1.fastq.gz	Fastqsanger.gz
	SRR18885542_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Bulbophyllum reptans

Project description:Bulbophyllum reptans Genome sequencing

| PRJNA830356 | ENA

Bulbophyllum tianguii

Project description:Bulbophyllum tianguii overview

| PRJNA806294 | ENA

Bulbophyllum tianguii

Project description:Bulbophyllum tianguii Genome sequencing and assembly

| PRJNA758604 | ENA

Bulbophyllum phaeoglossum

Project description:Bulbophyllum phaeoglossum Genome sequencing and assembly

| PRJNA351728 | ENA

Ajuga reptans

Project description:Ajuga reptans overview

| PRJNA970872 | ENA

Plastid phylogenomics for Bulbophyllum section Adelopetalum (Orchidaceae).

Project description:Plastid phylogenomics clarifies broad-level relationships in Bulbophyllum (Orchidaceae) and provides insights into range evolution of Australasian section Adelopetalum.

| PRJEB72010 | ENA

Ajuga reptans

Project description:Ajuga reptans

| PRJNA970766 | ENA

daAjuRept

Project description:Ajuga reptans (bugle)

| PRJEB80993 | ENA

Bulbophyllum papuaense (Orchidaceae), a new species from Indonesia.

Project description:A new species, Bulbophyllum papuaense, was described and illustrated from Indonesia. Bulbophyllum papuaense is similar to Bulbophyllum tortuosum and B. muscohaerens but differs from them by having rhizome and pseudobulbs covered with papillose scales, caudate and ciliate petals, linear and ciliate lip.

| S-EPMC6968976 | biostudies-literature

Effects of geographic isolation on the Bulbophyllum chloroplast genomes.

Project description:BackgroundBecause chloroplast (cp) genome has more conserved structures than nuclear genome and mitochondrial genome, it is a useful tool in estimating the phylogenetic relationships of plants. With a series of researches for cp genomes, there have been comprehensive understandings about the cp genome features. The genus Bulbophyllum widely distributed in Asia, South America, Australia and other places. Therefore, it is an excellent type genus for studying the effects of geographic isolation.ResultsIn this study, the cp genomes of nine Bulbophyllum orchids were newly sequenced and assembled using the next-generation sequencing technology. Based on 19 Asian (AN) and eight South American (SA) Bulbophyllum orchids, the cp genome features of AN clade and SA clade were compared. Comparative analysis showed that there were considerable differences in overall cp genome features between two clades in three aspects, including basic cp genome features, SSC/IRB junctions (JSBs) and mutational hotspots. The phylogenetic analysis and divergence time estimation results showed that the AN clade has diverged from the SA clade in the late Oligocene (21.50-30.12 mya). After estimating the occurrence rates of the insertions and deletions (InDels), we found that the change trends of cp genome structures between two clades were different under geographic isolation. Finally, we compared selective pressures on cp genes and found that long-term geographic isolation made AN and SA Bulbophyllum cp genes evolved variably.ConclusionThe results revealed that the overall structural characteristics of Bulbophyllum cp genomes diverged during the long-term geographic isolation, and the crassulacean acid metabolism (CAM) pathway may play an important role in the Bulbophyllum species evolution.

| S-EPMC9016995 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data