Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Bulk soil microbiome associated with Meloidogyne hapla occurrence

ABSTRACT: CHARACTERIZING MICROBIAL COMMUNITIES ASSOCIATED WITH THE NORTHERN ROOT-KNOT NEMATODE (MELOIDOGYNE HAPLA) OCCURRENCE AND SOIL HEALTH

PROVIDER: PRJNA833440 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Shared Molecules

Only show the datasets with similarity scores above: 0.5

Threshold

0.5

Similar Datasets

Meloidogyne hapla

Project description:Meloidogyne hapla

| PRJNA12707 | ENA

Project description:CHARACTERIZING MICROBIAL COMMUNITIES ASSOCIATED WITH THE NORTHERN ROOT-KNOT NEMATODE (MELOIDOGYNE HAPLA) OCCURRENCE AND SOIL HEALTH

| PRJNA833458 | ENA

Below ground attack by root knot nematode Meloidogyne graminicola predisposes rice to blast disease

Project description:Magnaporthe oryzae (rice blast) and the root-knot nematode Meloidogyne graminicola are causing two of the most important pathogenic diseases jeopardizing rice production. Here, we show that root-knot nematode infestation on rice roots leads to important above-ground changes in plant immunity gene expression, which is correlated with significantly enhanced susceptibility to blast disease.

2018-11-02 | GSE89449 | GEO

Meloidogyne hapla

Project description:Northern root-knot nematodes which are devastating pathogens of plant and fiber crops

| PRJNA12686 | ENA

RNA-seq of Arabidopsis thaliana Col-0 and opr2-1 mutants over four timepoints and (mock)infection with Meloidogyne incognita

Project description:We compared the gene expression of wild-type Col-0 and a T-DNA mutant SALK_116381C (opr2-1). We either infected or mock-infected the plants with the root knot nematode Meloidogyne incognita and measured the root transcriptome after 0, 1, 4, and 7 days post infection using RNA-seq. The aim of the experiment was to determine whether opr2-1 affected gene expression patterns induced by nematode infection.

2022-12-24 | E-MTAB-11583 | biostudies-arrayexpress

MELOHOSTRACE: Whole genome polymorphism across Meloidogyne incognita isolates showing different biological traits

Project description:High-coverage whole genome sequencing of 11 Brazilian isolates of the root-knot nematode Meloidogyne incognita, presenting different host plant preferences and different geographical origins. Four M. incognita host races had been proposed in the past, based on host (in)compatibility on four different plant strains. The objective was to assess whether genomic variations (SNP) correlate with host range compatibility, geographical origin and host plant of origin.

2019-07-10 | GSE116847 | GEO

Longitudinal and Diurnal Experiments of M. hapla and M. truncatula

Project description:We have infected the model legume Medicago truncatula with Meloidogyne hapla and harvested tissue over a time course. Transcriptome sequencing was performed on each sample using the Illumina RNA-Seq method. [Longitudinal Experiment] RNA was isolated from M. hapla eggs and pre-penetration juveniles (J2) and also from a time course of M. truncatula infected with M. hapla J2 at five time points: 1, 2, 4, 5, and 7 days after inoculation (DAI). Roots (local) and shoots (global) tissues from infected and uninfected plants were sampled. Each sample was loaded on five lanes for sequencing. Collectively, 22 samples were generated in total from - M. hapla egg and J2 (two samples), - infected M. truncatula root 1-2-4-5-7 DAI (five samples), - infected M. truncatula shoot 1-2-4-5-7 DAI (five samples), - uninfected M. truncatula root 1-2-4-5-7 DAI (five samples), - and uninfected M. truncatula shoot 1-2-4-5-7 DAI (five samples). Thus, 110 fastq files (= 22 samples x 5 lanes). [Diunrnal Experiment] M. truncatula roots inoculated with M. hapla was sampled at 6 time-points: 22:30, 2:00, 5:00, 6:30, 14:00, and 21:00. Lighting was turned off at 22:00 and turned on at 06:00. Four biological replicates were taken for each time point, providing 24 samples in total. Thus, 24 fastq files (= 6 time points x 4 replicates).

2017-04-30 | E-MTAB-4724 | biostudies-arrayexpress

Meloidogyne hapla isolate:MhF1-2 | cultivar:MhF1-2

Project description:Meloidogyne hapla isolate:MhF1-2 | cultivar:MhF1-2 Raw sequence reads

| PRJNA896710 | ENA

Meloidogyne paranaensis

Project description:coffee root-knot nematode

| PRJNA12747 | ENA

Meloidogyne exigua

Project description:coffee root-knot nematode

| PRJNA12742 | ENA