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Single-cell profiling of healthy human kidney reveals features of sex-based transcriptional programs and tissue-specific immunity

ABSTRACT: Single-cell profiling of healthy human kidney reveals features of sex-based transcriptional programs and tissue-specific immunity

PROVIDER: PRJNA834732 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR19053312.fastq.gz	Fastqsanger.gz
	SRR19053313.fastq.gz	Fastqsanger.gz
	SRR19053314.fastq.gz	Fastqsanger.gz
	SRR19053315.fastq.gz	Fastqsanger.gz
	SRR19053316.fastq.gz	Fastqsanger.gz

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Single-cell profiling of healthy human kidney reveals features of sex-based transcriptional programs and tissue-specific immunity

Project description:We present a single-cell perspective of healthy human kidney from 19 living donors, with equal contribution from males and females, profiling the transcriptome of 27677 high-quality cells to map healthy kidney at high resolution. Our sex-balanced dataset revealed sex-based differences in gene expression within proximal tubular cells, specifically, increased anti-oxidant metallothionein genes in females and the predominance of aerobic metabolism-related genes in males. Using CD45+ enrichment in 10 samples, we profile the immune niche of the kidney, identifying kidney-specific lymphocyte populations with unique transcriptional profiles indicative of kidney-adapted functions. We observed significant heterogeneity in resident myeloid populations and identified an MRC1+ LYVE1+ FOLR2+ C1QC+ population as the predominant myeloid population in healthy kidney. This study provides a broad cellular map of healthy human kidney, revealing novel insights into the complexity of renal parenchymal cells and kidney-resident immune populations.

2022-11-04 | GSE202109 | GEO

Single-cell profiling of healthy human kidney reveals features of sex-based transcriptional programs and tissue-specific immunity.

Project description:Knowledge of the transcriptional programs underpinning the functions of human kidney cell populations at homeostasis is limited. We present a single-cell perspective of healthy human kidney from 19 living donors, with equal contribution from males and females, profiling the transcriptome of 27677 cells to map human kidney at high resolution. Sex-based differences in gene expression within proximal tubular cells were observed, specifically, increased anti-oxidant metallothionein genes in females and aerobic metabolism-related genes in males. Functional differences in metabolism were confirmed in proximal tubular cells, with male cells exhibiting higher oxidative phosphorylation and higher levels of energy precursor metabolites. We identified kidney-specific lymphocyte populations with unique transcriptional profiles indicative of kidney-adapted functions. Significant heterogeneity in myeloid cells was observed, with a MRC1+LYVE1+FOLR2+C1QC+ population representing a predominant population in healthy kidney. This study provides a detailed cellular map of healthy human kidney, and explores the complexity of parenchymal and kidney-resident immune cells.

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