Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: De novo assembly and annotation of the transcriptome of the regionally endangered seagrass Zostera capensis

PROVIDER: PRJNA835347 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR19093813.fastq.gz	Fastqsanger.gz
	SRR19093814.fastq.gz	Fastqsanger.gz
	SRR19093815.fastq.gz	Fastqsanger.gz
	SRR19093816.fastq.gz	Fastqsanger.gz
	SRR19093817.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

Project description:Conservation implications of strong population structure despite admixture in the endangered seagrass Zostera capensis

| PRJNA1050843 | ENA

Eretmochelys imbricata strain:0

Project description:De Novo Assembly, and Annotation of the Transcriptome of the Endangered sea turtle, Eretmochelys imbricate

| PRJNA577692 | ENA

Project description:Chaerilus cimrmani De Novo Transcriptome Assembly and Annotation

| PRJNA1115122 | ENA

Translatome and transcriptome analyses reveal novel small peptides enhance rice herbicide resistance

Project description:We combined multi-omics approaches including de novo transcriptome assembly, ribosome profiling and MS-based peptidomics to study the global role of mRNA translation and small ORFs (sORFs) in rice herbicide resistant mutant.

2021-05-11 | PXD025927 |

Project description:Chaerilus stockmannorum De Novo Transcriptome Assembly and Annotation + Genome Assembly and Annotation

| PRJNA1115710 | ENA

Project description:De novo genome assembly, annotation, and SNP identification of an endangered rockcress, Boechera fecunda

| PRJNA657412 | ENA

SRA of transcriptome of Hevea brasiliensis

Project description:We first report the use of next-generation massively parallel sequencing technologies and de novo transcriptome assembly to gain insight into the wide range of transcriptome of Hevea brasiliensis. The output of sequenced data showed that more than 12 million sequence reads with average length of 90nt were generated. Totally 48,768 unigenes (mean size = 488 bp) were assembled through transcriptome de novo assembly, which represent more than 3-fold of all the sequences of Hevea brasiliensis deposited in the GenBank. Assembled sequences were annotated with gene descriptions, gene ontology and clusters of orthologous group terms. Total 37,373 unigenes were successfully annotated and more than 10% of unigenes were aligned to known proteins of Euphorbiaceae. The unigenes contain nearly complete collection of known rubber-synthesis-related genes. Our data provides the most comprehensive sequence resource available for study rubber tree and demonstrates the availability of Illumina sequencing and de novo transcriptome assembly in a species lacking genome information. The transcriptome of latex and leaf in Hevea brasiliensis

2011-09-01 | E-GEOD-26514 | biostudies-arrayexpress

Transcriptome profiles of sousa chinensis leucocyte

Project description:de novo assembly of the Indo-Pacific humpback dolphin leucocyte transcriptome for functional genomic analysis

2013-08-30 | E-MTAB-1748 | biostudies-arrayexpress

Deciphering m6A dynamics at single-base level during planarian anterior-posterior (AP) axis specification [mRNA]

Project description:We accomplished de novo transcriptome assembly for planarian Dugesia japonica.

2023-09-29 | GSE216411 | GEO

Transcriptome of Clarias gariepinus

Project description:De novo assembly and annotation of Clarias gariepinus transcriptome

| PRJEB21983 | ENA