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ScRNA-seq reveals differences in cell states and cell types between human hip, palm, and sole skin

ABSTRACT: scRNA-seq reveals differences in cell states and cell types between human hip, palm, and sole skin

PROVIDER: PRJNA835596 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR19114800_1.fastq.gz	Fastqsanger.gz
	SRR19114800_2.fastq.gz	Fastqsanger.gz
	SRR19114801_1.fastq.gz	Fastqsanger.gz
	SRR19114801_2.fastq.gz	Fastqsanger.gz
	SRR19114802_1.fastq.gz	Fastqsanger.gz

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scRNA-seq reveals differences in cell states and cell types between human hip, palm, and sole skin

Project description:Palmoplantar skin is structurally and functionally unique, but the transcriptional programs driving this specialization are unknown. Here, we exploit single-cell RNA-sequencing of human palm, sole, and hip skin to describe the distinguishing characteristics of palmoplantar and non-palmoplantar skin while also uncovering previously unappreciated differences between palmar and plantar sites. Our approach reveals downregulation of diverse immunological processes and decreased immune cell populations in palmoplantar skin, highlighting an altered immune environment in the skin of the palms and soles. Further, we identify specific palmoplantar and non-palmoplantar fibroblast populations that appear to orchestrate key differences in cell-cell communication in palm, sole, and hip. Dedicated analysis of epidermal keratinocytes highlights major differences in basal cell fraction among the three sites and validates the presence of a more differentiated, cycling basal population. Finally, our data demonstrate the existence of two spinous keratinocyte populations that constitute two parallel, site-selective epidermal differentiation trajectories. Together, these results provide a deep characterization of the highly adapted palmoplantar skin and contribute new insights into the fundamental biology of human skin.

2023-01-11 | GSE202352 | GEO

Differential cell composition and split epidermal differentiation in human palm, sole, and hip skin

Project description:Palmoplantar skin is structurally and functionally unique, but the transcriptional programs driving this specialization are unknown. Here, we exploit bulk and single-cell RNA-sequencing of human palm, sole, and hip skin to describe the distinguishing characteristics of palmoplantar and non-palmoplantar skin while also uncovering previously unappreciated differences between palmar and plantar sites. Our approach reveals downregulation of diverse immunological processes and decreased immune cell populations in palmoplantar skin, highlighting an altered immune environment in the skin of the palms and soles. Further, we identify specific palmoplantar and non-palmoplantar fibroblast populations that appear to orchestrate key differences in cell-cell communication in palm, sole, and hip. Dedicated analysis of epidermal keratinocytes highlights major differences in basal cell fraction among the three sites and validates the presence of a more differentiated, cycling basal population. Finally, our data demonstrate the existence of two spinous keratinocyte populations that constitute two parallel, site-selective epidermal differentiation trajectories. Together, these results provide a deep characterization of the highly adapted palmoplantar skin and contribute new insights into the fundamental biology of human skin.

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scATAC on palm and hip

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Differential cell composition and split epidermal differentiation in human palm, sole, and hip skin

Project description:Differential cell composition and split epidermal differentiation in human palm, sole, and hip skin

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scATAC on palm and hip

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single cell transcriptome profiling for palm and hip skin

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Differential cell composition and split epidermal differentiation in human palm, sole, and hip skin.

Project description:Palmoplantar skin is structurally and functionally unique, but the transcriptional programs driving this specialization are unclear. Here, we use bulk and single-cell RNA sequencing of human palm, sole, and hip skin to describe the distinguishing characteristics of palmoplantar and non-palmoplantar skin while also uncovering differences between palmar and plantar sites. Our approach reveals an altered immune environment in palmoplantar skin, with downregulation of diverse immunological processes and decreased immune cell populations. Further, we identify specific fibroblast populations that appear to orchestrate key differences in cell-cell communication in palm, sole, and hip. Dedicated keratinocyte analysis highlights major differences in basal cell fraction among the three sites and demonstrates the existence of two spinous keratinocyte populations constituting parallel, site-selective epidermal differentiation trajectories. In summary, this deep characterization of highly adapted palmoplantar skin contributes key insights into the fundamental biology of human skin and provides a valuable data resource for further investigation.

| S-EPMC9939370 | biostudies-literature

Gene Expression in Hip Soft Tissues in a Natural Canine Model of Developmental Dysplasia of the Hip

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2021-10-23 | GSE186394 | GEO

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