Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Sterol-degrading bacterial strain

PROVIDER: PRJNA835822 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR19122810_1.fastq.gz	Fastqsanger.gz
	SRR19122810_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 3 of 3

Similar Datasets

MC8b-genome

Project description:DCM-degrading bacterial strain

| PRJEB40967 | ENA

Sterol-degrading bacteria

Project description:Genome analysis of sterol-degrading bacteria isolated from marine sponges

| PRJEB30766 | ENA

Whole gene transcriptomic analysis of testosterone/17 beta-estradiol degrading in Comamonas testosteroni JLU460ET

Project description:Purpose: find testosterone/17 beta-estradiol degrading genes in strain Comamonas testosteroni JLU460ET

2021-09-17 | GSE184154 | GEO

Biofilms of the PAH-degrading Sphingomonas sp. LH128 on solute stress when actively degrading and growing on phenanthrene

Project description:This study examines the transcriptomic response of biofilms of the PAH-degrading Sphingomonas sp. LH128 on solute stress when actively degrading and growing on the PAH compound. To address the effect of solute stress on bacterial physiology and transcriptomic response, NaCl was used as osmolyte. Both acute and chronic solute stress was invoked to assess differences in short-term and long-term responses. Transcriptomic response of phenanthrene degrading Sphingomonas sp. LH128 biofilms as a response to short-term and long-term solute (NaCl) stress was studied using genome-wide gene expression analysis. For this purpose, the strain was grown in customized continuous glass flow chambers that contain solid phenanthrene as a sole carbon source and that allow easy recovery of biofilm cells for transcriptomic and physiological analysis. A NaCl stress of 450 mM was imposed on LH128 biofilms growing on phenanthrene crystals coated on glass slides either for 4 hours (acute stress) or for 3 days (chronic stress). RNA was extracted from the biofilm and cDNA was synthesized and labeled with Cy3. Transcriptomic response in the stressed biofilms of three replicates per conditions were analyzed and compared with non-stressed

2012-06-18 | E-GEOD-38296 | biostudies-arrayexpress

Biofilms of the PAH-degrading Sphingomonas sp. LH128 on solute stress when actively degrading and growing on phenanthrene

2012-06-18 | GSE38296 | GEO

GC-MS files for modeling bacterial interactions in coastal lignin degrading consortium

Project description:GC-MS files for modeling bacterial interactions in coastal lignin degrading consortium

| MSV000095829 | MassIVE

LC-MSMS files for modeling bacterial interactions in coastal lignin degrading consortium

Project description:LC-MSMS files for modeling bacterial interactions in coastal lignin degrading consortium

| MSV000095828 | MassIVE

LC-MS files for modeling bacterial interactions in coastal lignin degrading consortium

Project description:LC-MS files for modeling bacterial interactions in coastal lignin degrading consortium

| MSV000095821 | MassIVE

Sterol-response pathways mediate alkaline survival in diverse fungi.

Project description:To determine how the fungal sterol homeostasis pathway contributes to the fungal pH response. To do so, we compared the transcriptomes of the sre1∆ mutant strain to that of the WT H99 strain in acidic (pH 4) and alkaline (pH 8) conditions.

2020-03-18 | GSE147109 | GEO

A global differential transcriptomic profiling of Mycobacterium gilvum PYR-GCK during pyrene and glucose metabolism, using RNA seq.

Project description:We report the differential expression of a PAH degrading bacterium in different states of substrate induction. Separate substrate cultivation of the same batch of bacterial isolates; total RNA extraction, processing and sequencing; gene expression analysis using bioinformatics softwares and experimental validation using qRT-PCR.

2013-02-22 | E-GEOD-44536 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data