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Transcriptome and Methylome analysis of flowering branches building of Citrus plants induced by light drought (LD) condition

ABSTRACT: Transcriptome and Methylome analysis of flowering branches building of Citrus plants induced by light drought (LD) condition

PROVIDER: PRJNA837759 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR19184700_1.fastq.gz	Fastqsanger.gz
	SRR19184700_2.fastq.gz	Fastqsanger.gz
	SRR19184701_1.fastq.gz	Fastqsanger.gz
	SRR19184701_2.fastq.gz	Fastqsanger.gz
	SRR19184742_1.fastq.gz	Fastqsanger.gz

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Similar Datasets

Transcriptome analysis of flowering branches building of Citrus plants induced by light drought (LD) condition [RNA-seq]

Project description:To investigate the cooperation of light drought with flower branches building and flower bud formation in Citrus, we set two groups including 75 days light drought (LD) and CK to uncover which target genes relatived to flower bud and branches building have been influenced by LD. We then performed gene expression profiling analysis using data obtained from RNA-seq of two different treatment.

2022-07-26 | GSE202925 | GEO

Methylome analysis of flowering branches building of Citrus plants induced by light drought (LD) condition [Bisulfite-Seq]

Project description:The changes of golbal DNA methylation level are relative to phenotypes transition of plant, expecially during producetive growth program. Therefore, we detect the grolbal DNA methlation and transcription level of stems after LD treated and CK group to compare the DNA methylomes difference between CK and LD group. The increase in DNA methylation level of LD group was correlated with decreased expression of DNA demethylase genes.There was a strong negative correlation between the genes expression level and methylation level of the flowering induction/flower development genes.

2022-07-26 | GSE202926 | GEO

Methylome analysis of flowering branches building of Citrus plants induced by light drought (LD) condition [Bisulfite-Seq]

Project description:Methylome analysis of flowering branches building of Citrus plants induced by light drought (LD) condition [Bisulfite-Seq]

| PRJNA837761 | ENA

Transcriptome analysis of flowering branches building of Citrus plants induced by light drought (LD) condition [RNA-seq]

Project description:Transcriptome analysis of flowering branches building of Citrus plants induced by light drought (LD) condition [RNA-seq]

| PRJNA837762 | ENA

Transcriptome and Methylome analysis of flowering branches building of Citrus plants induced by light drought (LD) condition

Project description:This SuperSeries is composed of the SubSeries listed below.

2022-07-26 | GSE202927 | GEO

Brassica napus cultivar:Inbred material, late flowering, few branches

Project description:Brassica napus cultivar:Inbred material, late flowering, few branches Raw sequence reads

| PRJNA523520 | ENA

Brassica napus cultivar:Inbred material, late flowering, few branches

Project description:Brassica napus cultivar:Inbred material, late flowering, few branches Raw sequence reads

| PRJNA523514 | ENA

Role of bHLH93 in controlling flowering time in Arabidopsis

Project description:Flowering in plants is a very dynamic and synchronized process where various cues including age, day-length, temperature and endogenous hormones fine-tune the timing of flowering for reproductive success. Arabidopsis thaliana is a facultative long day plant where long-day (LD) photoperiod promotes flowering. Arabidopsis still flowers under short-day (SD) conditions, albeit much later than LD conditions. Although, factors regulating the photoperiodic LD pathway have been extensively investigated, the SD pathway is much less understood. Here we identified a critical transcription factor called bHLH93 (basic Helix-Loop-Helix 93) that is essential to induce flowering specifically under SD conditions in Arabidopsis. bhlh93 mutants do not flower from primary meristem under SD conditions, but flowers similar to wild type under LD conditions. The late flowering phenotype is rescued by exogenous application of GA, suggesting that bHLH93 acts upstream of GA pathway to promote flowering. Double mutant studies showed that bhlh93 is epistatic to phyB and soc1 genes under SD conditions. bHLH93 is expressed at the meristematic regions and its expression peaks at 8 hours after dawn under SD conditions. As expected, the bHLH93 is localized in the nucleus. Taken together, these data suggest that bHLH93 is a key transcription factor necessary for Arabidopsis thaliana to evolve as a facultative plant.

2011-12-31 | GSE29786 | GEO

Role of bHLH93 in controlling flowering time in Arabidopsis

2011-12-31 | E-GEOD-29786 | biostudies-arrayexpress

Gene expression profiling of Antarctic krill in LD condition

Project description:This work represents the first characterization of the krill circadian transcriptome under laboratory conditions and provides a first insight into the genetic regulation of physiological changes, which occur around the clock in light-dark (LD) and in constant darkness (DD) condition.

2019-10-01 | GSE94756 | GEO

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