Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Marchantia polymorpha strain:Takaragaike

ABSTRACT: RNA sequencing of liverwort Marchantia polymorpha wild type and gun1 mutant spores

PROVIDER: PRJNA838206 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR19401944_1.fastq.gz	Fastqsanger.gz
	SRR19401944_2.fastq.gz	Fastqsanger.gz
	SRR19401945_1.fastq.gz	Fastqsanger.gz
	SRR19401945_2.fastq.gz	Fastqsanger.gz
	SRR19401946_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 10

Similar Datasets

Marchantia polymorpha cultivar:Takaragaike

Project description:RNA sequencing of liverwort Marchantia polymorpha wild type and gun1 mutant spores grown in the presence or absence of spectinomycin

| PRJNA800059 | ENA

DE-ETIOLATED1 has a role in the circadian clock of the liverwort Marchantia polymorpha

Project description:Identification of genes with circadian rhythm in the liverwort Marchantia polymorpha subsp. ruderalis

2021-07-21 | GSE180340 | GEO

5-methyl cytosine profile of the wild type and Mpmet mutant in Marchantia polymorpha

Project description:To understand a role of MpMET in maintenance of cytpsine methylation and transposon silencing, we obtained a genome wide profile of 5-methylated cytosine from the Mpmet mutant of a model liverwort, Marchantia polymorpha.

2023-09-21 | GSE234851 | GEO

Conservation of antiviral defences in the non-vascular plant Marchantia polymorpha

Project description:Most of our current knowledge about the molecular events ruling plant-virus interaction come from studies focusing on vascular plants. We here characterized the molecular, cellular and physiological events goberning plant-virus interactions in the non-vascular liverwort Marchantia polymorpha.

2024-08-16 | GSE241827 | GEO

Transcriptome changes triggered by the loss of function of gene Mppcs in genome-edited Marchantia polymorpha plants

Project description:In the present study, Marchantia polymorpha Mppcs loss of function mutants were generated through CRISPR/cas9 mediated genome-editing. To assess whether the knockout of MpPCS gene affects the transcription of M. polymorpha nuclear genes in unstressed condition, the Mppcs-2 knockout mutant and Cam2 wild-type transcriptomes were compared by RNA-Seq.

2022-08-29 | E-MTAB-11885 | biostudies-arrayexpress

EVOREPRO: RNA-seq of Marchantia polymorpha Takaragaike sperm cells

Project description:Marchantia sperm RNA-seq data

2021-04-14 | E-MTAB-9457 | biostudies-arrayexpress

Marchantia polymorpha subsp. ruderalis strain:Takaragaike-1

Project description:Transcriptiome after excision in the liverwort Marchantia polymorpha

| PRJDB12610 | ENA

High-light stress RNA-seq Marchantia polymorpha

Project description:In order to elucidate the role of the single Marchantia B-GATA ortholog in response to high light intensities, a transcriptomic analysis of Marchantia polymorpha BoGa, Mpb-gata1 mutants and MpB-GATA1ox under high-ligh stress conditions was performed.

2023-07-26 | GSE208562 | GEO

Marchantia polymorpha

Project description:Transcriptome analysis of antheridia of the liverwort, Marchantia polymorpha.

| PRJDB4420 | ENA

A single JAZ repressor controls the jasmonate pathway in Marchantia polymorpha

Project description:JAZ genes are negative regulators of jasmonate responses with a dual function as repressors of transcription factors and co-receptors, together with COI1, of the hormone jasmonoyl-isoleucine (JA-Ile). This family has been mainly studied in angiosperms, where high gene redundancy hinders the characterization of a complete depletion of JAZ function. Moreover, the recent discovery that JA-Ile is not the sole COI1/JAZ ligand in land plants, as dn-OPDA is the bioactive ligand in Marchantia polymorpha, underscores the importance of studying JAZ co-receptors in bryophytes. Here we exploited the low gene redundancy of the liverwort Marchantia polymorpha to characterize the function of the single MpJAZ in this early-divergent plant lineage. We demonstrate that MpJAZ is the ortholog of AtJAZ and acts as a repressor of dinor-OPDA responses in Marchantia. Mpjaz mutants show a dwarf phenotype and severe developmental defects related to growth inhibition, consistent with a constitutive activation of the dinor-OPDA pathway and the overaccumulation of both dinor-OPDA and its precursor OPDA. The expression of AtJAZ3 in Mpjaz complements MpJAZ repressor function, indicating that JAZ function is conserved across land plants. However, AtJAZ3 is unable to form co-receptor complexes with MpCOI1 and dn-OPDA, which evidences that the Jas domain, and not only COI1, determines ligand specificity.

2018-11-10 | GSE118149 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data