Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Triticum aestivum

ABSTRACT: Whole-transcriptome sequencing of wheat (Triticum aestivum) Raw sequence reads

PROVIDER: PRJNA838787 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR19243503_1.fastq.gz	Fastqsanger.gz
	SRR19243503_2.fastq.gz	Fastqsanger.gz
	SRR19243504_1.fastq.gz	Fastqsanger.gz
	SRR19243504_2.fastq.gz	Fastqsanger.gz
	SRR19243505_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 24

Similar Datasets

Transcriptome of Triticum aestivum genotypes associated with resistance against the Wheat dwarf virus

Project description:Purpose: Next-generation sequencing (NGS) has revolutionized systems-based analysis of cellular pathways. The goals of this study are to compare NGS-derived Triticum aestivum transcriptome (RNA-seq) profiling methods and to evaluate genotypes associated with resistance against the Wheat dwarf virus. Methods: Triticum aestivum mRNA profiles of genotypes associated with resistance against the Wheat dwarf virus were generated by deep sequencing, in four replicates, using Illumina. The sequence reads that passed quality filters were analyzed at the transcript isoform level with two methods: Burrows–Wheeler Aligner (BWA) followed by ANOVA (ANOVA) and TopHat followed by Cufflinks. qRT–PCR validation was performed using TaqMan and SYBR Green assays. Conclusions: Our study represents the first detailed analysis of Triticum aestivum transcriptomes, with biologic replicates, generated by RNA-seq technology. The optimized data analysis workflows reported here should provide a framework for comparative investigations of expression profiles. Our results show that NGS offers a comprehensive and more accurate quantitative and qualitative evaluation of mRNA and miRNA content within a cell or tissue. We conclude that RNA-seq based transcriptome characterization would expedite genetic network analyses and permit the dissection of complex biologic functions.

2023-04-04 | GSE192518 | GEO

Genome-wide Identification of Fusarium graminearum-Responsive lncRNAs in Triticum aestivum

Project description:We identified the long non-coding RNAs (lncRNAs) in Triticum aestivum infected with Fusarium graminearum by high-throughput RNA sequencing. More than 393 million clean reads were obtained from Illumina Hiseq 4000 system and 126,391 transcripts was identified as high-confidence lncRNAs in T. aestivum against F. graminearum by an integrated approach. Already well over 4,130 of the total 4,276 differentially expressed lncRNAs were specifically expressed at 12 h post-inoculation (hpi), but only 89 of these were specifically expressed at 24 hpi, indicating that the initial stage was the crucial stage for lncRNA-mediated gene regulation of wheat defense against F. graminearum. Target analysis showed the lncRNAs participated in various biological stress processes.

2023-09-18 | GSE158213 | GEO

Triticum aestivum cultivar:Wheat

Project description:Triticum aestivum cultivar:Wheat Raw sequence reads

| PRJNA656889 | ENA

Triticum aestivum cultivar:Wheat

Project description:Triticum aestivum cultivar:Wheat Raw sequence reads

| PRJNA376820 | ENA

Triticum aestivum cultivar:wheat

Project description:Triticum aestivum cultivar:wheat Raw sequence reads

| PRJNA974680 | ENA

Triticum aestivum L. (Wheat) MS2

Project description:MS2 data for two Indian varieties of Triticum aestivum L. (Wheat). P1 to P5 files represent MS2 data in positive ESI mode whereas N1 to N5 files represent MS2 data in negative ESI mode.

2023-04-23 | MSV000091783 | MassIVE

Triticum aestivum strain:cultivar Transcriptome or Gene expression

Project description:The pistillody mutant wheat (Triticum aestivum L.) plant HTS-1 exhibits homeotic transformation of stamens into pistils or pistil-like structures. Unlike common wheat varieties, HTS-1 produces three to six pistils per floret, potentially increasing the yield. Thus, HTS-1 is highly valuable in the study of floral development in wheat. In this study, we conducted RNA sequencing of the transcriptomes of the pistillody stamen (PS) and the pistil (P) from HTS-1 plants, and the stamen (S) from the non-pistillody control variety Chinese Spring TP to gain insights into pistil and stamen development in wheat.

2014-03-14 | E-MTAB-4469 | biostudies-arrayexpress

Triticum aestivum

Project description:Triticum aestivum L. Transcriptome Raw sequence reads

| PRJNA470533 | ENA

Triticum aestivum

Project description:Triticum aestivum Raw sequence reads

| PRJNA811743 | ENA

Triticum aestivum

Project description:Triticum aestivum Raw sequence reads

| PRJNA557007 | ENA