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Rhizoctonia solani strain:AG1-IA_HG81

ABSTRACT: Rhizoctonia solani strain:AG1-IA_HG81 Genome sequencing

PROVIDER: PRJNA841755 | ENA |

REPOSITORIES: ENA

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			Action	DRS
		Other
	SRR19543540.fastq.gz	Fastqsanger.gz
	SRR19543541_1.fastq.gz	Fastqsanger.gz

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Rhizoctonia solani strain:AG1-IA_BRS1

Project description:Rhizoctonia solani strain:AG1-IA Genomic data

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The pangenome analysis of the soil-borne fungal phytopathogen Rhizoctonia solani and development of a comprehensive web resource: RsolaniDB

Project description:Rhizoctonia solani Kühn is a soilborne basidiomycetous fungus that causes significant damage to many economically important crops. R. solani isolates are classified into 13 Anastomosis Groups (AGs) with interspecific subgroups having distinctive morphology, pathogenicity and wide host range. However, the genetic factors that drive the unique fungal pathology are still not well characterized due to the limited number of available annotated genomes. Therefore, we performed genome sequencing, assembly, annotation and functional analysis of 13 R. solani isolates covering 7 AGs and selected subgroups (AG1-IA, AG1-IB, AG1-IC, AG2-2IIIB, AG3-PT, AG3-TB, AG4-HG-I, AG5, AG6, and AG8). Here, we report a pangenome comparative analysis of 13 R. solani isolates covering important groups to elucidate unique and common attributes associated with each isolate, including molecular factors potentially involved in determining AG-specific host preference. Finally, we present the largest repertoire of annotated R. solani genomes, compiled as a comprehensive and user-friendly database, viz. RsolaniDB. Since 7 genomes are reported for the first time, the database stands as a valuable platform for formulating new hypotheses by hosting annotated genomes, with tools for functional enrichment, orthologs and sequence analysis, currently not available with other accessible state-of-the-art platforms hosting Rhizoctonia genome sequences.

2020-10-03 | E-MTAB-9588 | biostudies-arrayexpress

Rhizoctonia solani AG1-IB

Project description:Draft genome sequencing project of the phytopathogenic fungus Rhizoctonia solani AG1-IB.

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Rhizoctonia solani AG-1 IA strain:AG1-IA

Project description:Rhizoctonia solani AG-1 IA strain:AG1-IA Transcriptome or Gene expression

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Rhizoctonia solani strain:BRS11

Project description:Rhizoctonia solani AG1-IA BRS11 Raw sequence reads

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Rhizoctonia solani strain:BRS13

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Rhizoctonia solani AG1-IA

Project description:Molecular intricacies of Rice-Rhizoctonia solani interactions

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The Rhizoctonia solani transcriptome during interaction with the host plant Lactuca sativa

Project description:We present the first results of a high coverage Dual RNA-Seq experiment of an R. solani AG1-IB 7/3/14 and L. sativa interaction model with focus on the R. solani transcriptome. With this experiment it is our goal to expand the knowledge regarding the pathosystem L. sativa R. solani AG1-IB through the determination of genes, of pivotal importance for this interaction and who can therefore be seen as putative pathogenicity determinants of R. solani infection within this specific host species.

2017-05-17 | E-MTAB-4762 | biostudies-arrayexpress

Rhizoctonia solani

Project description:Rhizoctonia solani Genome sequencing

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Rhizoctonia solani AG8 infection of wheat seedling roots

Project description:Rhizoctonia solani is a nectrotrophic fungal pathogen that causes billions of dollars of damage to agriculture worldwide and infects a broad host range including wheat, rice, potato and legumes. In this study we identify wheat genes that are differentially expressed in response to the R. solani isolate, AG8-1, using microarray technology. A significant number of wheat genes identified in this screen were involved in ROS production and redox regulation. Levels of ROS species were increased in wheat root tissue following R. solani infection as determined by NBT, DAB and titanium sulphate measurements/stainings. Pathogen/ROS related genes from R. solani were also tested for expression patterns upon wheat infection. TmpL, a R. solani gene homologous to a gene associated with ROS regulation in Alternaria brassicicola, and OAH, a R. solani gene homologous to oxaloacetate acetylhydrolase which has been shown to produce oxalic acid in Sclerotinia sclerotiorum, were highly induced in R.solani when infecting wheat. We speculate that the wheat germin-like protein (GLP) is induced to inactivate the oxalic acid that is produced by the R. solani OAH.

2015-11-04 | GSE74671 | GEO

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