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Scardinius erythrophthalmus

ABSTRACT: Scardinius erythrophthalmus overview

PROVIDER: PRJNA842117 | ENA |

REPOSITORIES: ENA

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Dataset's files

Source:

			Action	DRS
		Other
	SRR19371590_1.fastq.gz	Fastqsanger.gz
	SRR19371590_2.fastq.gz	Fastqsanger.gz
	SRR19371591_subreads.fastq.gz	Fastqsanger.gz

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Scardinius erythrophthalmus

Project description:Scardinius erythrophthalmus principal pseudohaplotype genome sequencing

| PRJNA841808 | ENA

Scardinius erythrophthalmus

Project description:Scardinius erythrophthalmus alternate pseudohaplotype genome sequencing

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fScaEry

Project description:Scardinius erythrophthalmus (rudd)

| PRJEB75416 | ENA

Pipilo erythrophthalmus strain:NA

Project description:Pipilo erythrophthalmus

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Phacellodomus erythrophthalmus strain:NA

Project description:Phacellodomus erythrophthalmus

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Project description:Scardinius erythrophthalmus genome sequencing

| PRJNA842418 | ENA

fScaEry

Project description:Scardinius erythrophthalmus (rudd), genomic and transcriptomic data

| PRJEB75415 | ENA

fScaEry2 hap2

Project description:Scardinius erythrophthalmus (rudd) genome assembly, fScaEry2 haplotype 2

| PRJEB77365 | ENA

fScaEry2 hap1

Project description:Scardinius erythrophthalmus (rudd) genome assembly, fScaEry2 haplotype 1

| PRJEB77366 | ENA

Cross-species amplification of 36 cyprinid microsatellite loci in Phoxinus phoxinus (L.) and Scardinius erythrophthalmus (L.).

Project description:BackgroundTo conduct phylogeographic or population genetic studies, an adequate number of DNA markers for the focal species are required. Due to severe unavailability of genotype markers of any kind for the species Eurasian minnow (Phoxinus phoxinus L.) and rudd (Scardinius erythrophthalmus L.), we set out to attempt cross-amplification of a set of microsatellite loci from related species.FindingsWe tested 36 cyprinid microsatellite loci for cross-species amplification in minnow and rudd. Fifteen species-locus combinations produced amplifications in minnow, seven being polymorphic, while 18 combinations amplified in rudd, nine of these being polymorphic.ConclusionsThe positive cross-species amplifications present potential contributions to the establishment of genetic marker sets for population genetics studies of the two focal species.

| S-EPMC2801513 | biostudies-literature

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