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Scardinius erythrophthalmus

ABSTRACT: Scardinius erythrophthalmus overview

PROVIDER: PRJNA842117 | ENA |

REPOSITORIES: ENA

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Dataset's files

Source:

			Action	DRS
		Other
	ERR13063104_1.fastq.gz	Fastqsanger.gz
	ERR13063104_2.fastq.gz	Fastqsanger.gz
	ERR13093657_1.fastq.gz	Fastqsanger.gz
	ERR13093657_2.fastq.gz	Fastqsanger.gz

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Scardinius erythrophthalmus

Project description:Scardinius erythrophthalmus alternate pseudohaplotype genome sequencing

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Scardinius erythrophthalmus

Project description:Scardinius erythrophthalmus principal pseudohaplotype genome sequencing

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fScaEry

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Phacellodomus erythrophthalmus strain:NA

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Pipilo erythrophthalmus strain:NA

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Project description:Scardinius erythrophthalmus genome sequencing

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fScaEry

Project description:Scardinius erythrophthalmus (rudd), genomic and transcriptomic data

| PRJEB75415 | ENA

fScaEry2 hap1

Project description:Scardinius erythrophthalmus (rudd) genome assembly, fScaEry2 haplotype 1

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fScaEry2 hap2

Project description:Scardinius erythrophthalmus (rudd) genome assembly, fScaEry2 haplotype 2

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Cross-species amplification of 36 cyprinid microsatellite loci in Phoxinus phoxinus (L.) and Scardinius erythrophthalmus (L.).

Project description:BackgroundTo conduct phylogeographic or population genetic studies, an adequate number of DNA markers for the focal species are required. Due to severe unavailability of genotype markers of any kind for the species Eurasian minnow (Phoxinus phoxinus L.) and rudd (Scardinius erythrophthalmus L.), we set out to attempt cross-amplification of a set of microsatellite loci from related species.FindingsWe tested 36 cyprinid microsatellite loci for cross-species amplification in minnow and rudd. Fifteen species-locus combinations produced amplifications in minnow, seven being polymorphic, while 18 combinations amplified in rudd, nine of these being polymorphic.ConclusionsThe positive cross-species amplifications present potential contributions to the establishment of genetic marker sets for population genetics studies of the two focal species.

| S-EPMC2801513 | biostudies-literature

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