Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

SOX9 manipulation in human melanoma cell culture [CUT&RUN]

ABSTRACT: SOX9 manipulation in human melanoma cell culture [CUT&RUN]

PROVIDER: PRJNA843325 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR19439400_1.fastq.gz	Fastqsanger.gz
	SRR19439400_2.fastq.gz	Fastqsanger.gz
	SRR19439401_1.fastq.gz	Fastqsanger.gz
	SRR19439401_2.fastq.gz	Fastqsanger.gz
	SRR19439402_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 152

Similar Datasets

SOX9 manipulation in human melanoma cell culture [CUT&RUN]

Project description:CUT&RUN profiling to compare SOX9 and SOX10 binding in non-transfected A375 cells and A375 cells transfected with SOX9-HA.

2024-05-31 | GSE205044 | GEO

SOX9 manipulation in human melanoma cell culture

Project description:SOX9 manipulation in human melanoma cell culture

| PRJNA843328 | ENA

SOX9 manipulation in human melanoma cell culture [RNA-seq]

Project description:SOX9 manipulation in human melanoma cell culture [RNA-seq]

| PRJNA843329 | ENA

SOX9 manipulation in human melanoma cell culture [RNA-seq]

Project description:RNA-seq profiling to compare gene expression in non-transfected A375 cells and A375 cells transfected with SOX9-HA.

2024-05-31 | GSE205045 | GEO

CUT&RUN LoV-U for SMAD4 in human melanoma cells

Project description:CUT&RUN LoV-U was performed against SMAD4 using two different antibodies in M170117 human melanoma cells under 4 conditions: Control (DMSO), TGFb, MEKi and TGFb + MEKi (Both).

2024-04-22 | E-MTAB-13951 | biostudies-arrayexpress

CUT&RUN Targeting SALL4 and HDAC2 in human melanoma cells

Project description:SALL4 builds a complex with histone deacetylases, and is thought to confer its effects epigenetically. Both loss of Sall4 and inhibition of HDAC2 leads to an invasiveness in human melanoma cells. To study co-occupancy of SALL4 and HDAC2, we employed CUT&RUN targeting SALL4 and HDAC2 in human melanoma cells (M010817).

2021-06-30 | E-MTAB-10163 | biostudies-arrayexpress

Bulk Cut&run and Cut&tag

Project description:Bulk Cut&run and Cut&tag

| PRJNA686390 | ENA

HOXA13 Cut & Run of Human Melanoma Cells

Project description:HOXA13 Cut & Run of Human Melanoma Cells

| PRJNA753322 | ENA

CUT&RUN HUDEP1 OE SOX6-Flag

Project description:SOX6 CUT&RUN on HUDEP1 over expressing SOX6-Flag. The experiment is done using and anti Flag Ab to assist the genome wide binding profile of SOX6 in HUDEP1 (Human Umbilical cord blood-Derived Erythroid Progenitor-1).

2023-04-07 | E-MTAB-12800 | biostudies-arrayexpress

Identification of chromatin states during zebrafish gastrulation using CUT&RUN and CUT&Tag

Project description:Here we describe successful implementation of CUT&RUN for profiling protein-DNA interactions in zebrafish embryos. We apply modified a CUT&RUN method to generate high resolution maps of enrichment for H3K4me3, H3K27me3, H3K9me3, and RNA polymerase II during zebrafish gastrulation. Using this data, we identify a conserved subset of developmental genes that are enriched in both H3K4me3 and H3K27me3 during gastrulation, and we demonstrate the increased effectiveness of CUT&RUN for detecting protein enrichment at repetitive sequences with reduced mappability. Our work demonstrates the power of combining CUT&RUN with the strengths of the zebrafish system to better understand the changing embryonic chromatin landscape and its roles in shaping development.

2021-06-17 | GSE178343 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data