Project description:In this study, we analyzed the complete mitochondrial genome of Eudynamys scolopaceus using Illumina and Pacbio next-generation sequencing. The total length of the mitogenome was 18,170 bp and contained 13 protein-coding genes (PCGs), two ribosomal RNAs, 22 transfer RNAs, a non-coding control region, and two repeat regions. The order of the genes and genome structure were the same as those in a previous publication in other Cuculidae species. A phylogenetic tree constructed with 13 PCGs indicated that E. scolopaceus is closely related to Urodynamis taitensis and genus Cuculus.
Project description:This study aims to investigate the DNA methylation patterns at transcription factor binding regions and their evolutionary conservation with respect to binding activity divergence. We combined newly generated bisulfite-sequencing experiments in livers of five mammals (human, macaque, mouse, rat and dog) and matched publicly available ChIP-sequencing data for five transcription factors (CEBPA, HNF4a, CTCF, ONECUT1 and FOXA1). To study the chromatin contexts of TF binding subjected to distinct evolutionary pressures, we integrated publicly available active promoter, active enhancer and primed enhancer calls determined by profiling genome wide patterns of H3K27ac, H3K4me3 and H3K4me1.
