Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Halomonas bluephagenesis

ABSTRACT: Halomonas bluephagenesis overview

PROVIDER: PRJNA844157 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR12797078_1.fastq.gz	Fastqsanger.gz
	SRR12797078_2.fastq.gz	Fastqsanger.gz
	SRR12797079_1.fastq.gz	Fastqsanger.gz
	SRR12797079_2.fastq.gz	Fastqsanger.gz
	SRR12797080_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

Halomonas bluephagenesis

Project description:Halomonas bluephagenesis Raw sequence reads

| PRJNA843537 | ENA

Halomonas Bluephagenesis TD01

Project description:Halomonas Bluephagenesis TD01 Genome

| PRJEB49482 | ENA

Baseline Proteomics Characterisation of Biomanufacturing Organism Halomonas Bluephagenesis

Project description:Biomanufacturing remains financially uncompetitive with the lower cost but higher carbon emitting hydrocarbon based chemical industry. Novel chassis organisms may enable cost reductions with respect to traditional chassis such as E. coli and so open an economic rout to low emission biomanufacturing. Extremophile bacteria exemplify that potential. Salt tolerant halomonas species thrive in conditions inimical to other organisms. Their adoption would eliminate the cost of sterilising equipment. Novel chassis are inevitably poorly understood in comparison to established organisms. Rapid characterisation and community data sharing will facilitate organisms’ adoption for biomanufacturing. This paper describes baseline proteomics data set for Halomonas bluephagenesis TD01 under active development for biomanufactoring. The data record comprises a newly sequenced genome for the organism; evidence for expression of 1150 proteins (30% of the proteome) including baseline quantification of 1050 proteins (27% of the proteome) and a spectral library enabling re-use for targeted proteomics assays. Protein data is annotated with KEGG Orthology enabling rapid matching of quantitative data to pathways of interest to biomanufacturing.

2022-07-11 | PXD030494 | Pride

Halomonas bluephagenesis strain:TD01

Project description:Halomonas bluephagenesis strain:TD01 Genome sequencing

| PRJNA1010478 | ENA

Hyperproduction of 3-hydroxypropionate by Halomonas bluephagenesis.

Project description:3-Hydroxypropionic acid (3HP), an important three carbon (C3) chemical, is designated as one of the top platform chemicals with an urgent need for improved industrial production. Halomonas bluephagenesis shows the potential as a chassis for competitive bioproduction of various chemicals due to its ability to grow under an open, unsterile and continuous process. Here, we report the strategy for producing 3HP and its copolymer poly(3-hydroxybutyrate-co-3-hydroxypropionate) (P3HB3HP) by the development of H. bluephagenesis. The transcriptome analysis reveals its 3HP degradation and synthesis pathways involving endogenous synthetic enzymes from 1,3-propanediol. Combing the optimized expression of aldehyde dehydrogenase (AldDHb), an engineered H. bluephagenesis strain of whose 3HP degradation pathway is deleted and that overexpresses alcohol dehydrogenases (AdhP) on its genome under a balanced redox state, is constructed with an enhanced 1.3-propanediol-dependent 3HP biosynthetic pathway to produce 154 g L-1 of 3HP with a yield and productivity of 0.93 g g-1 1,3-propanediol and 2.4 g L-1 h-1, respectively. Moreover, the strain could also accumulate 60% poly(3-hydroxybutyrate-co-32-45% 3-hydroxypropionate) in the dry cell mass, demonstrating to be a suitable chassis for hyperproduction of 3HP and P3HB3HP.

| S-EPMC7940609 | biostudies-literature

Influence of 3HP and PDO on cell metabolism at the transcriptional level in Halomonas bluephagenesis

Project description:Influence of 3HP and PDO on cell metabolism at the transcriptional level in Halomonas bluephagenesis

| PRJNA668148 | ENA

Halomonas qaidamensis

Project description:Halomonas qaidamensis overview

| PRJNA1059728 | ENA

Halomonas smyrnensis

Project description:Halomonas smyrnensis overview

| PRJNA135313 | ENA

Halomonas urumqiensis

Project description:Halomonas urumqiensis overview