Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Transcriptome of Halomonas strains

PROVIDER: PRJNA846124 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR19601507_1.fastq.gz	Fastqsanger.gz
	SRR19601507_2.fastq.gz	Fastqsanger.gz
	SRR19601508_1.fastq.gz	Fastqsanger.gz
	SRR19601508_2.fastq.gz	Fastqsanger.gz
	SRR19601509_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 24

Similar Datasets

Project description:Halomonas strains sequencing

| PRJNA612408 | ENA

Phenotypic responses to interspecies competition and commensalism in a naturally-derived microbial co-culture

Project description:Testing of response of hetertrophic partners (Halomonas sp. HL-48 and Marinobacter sp. HL-58) to both axenic and co-culture growth using both glucose and xylose

2017-09-13 | GSE103773 | GEO

Project description:Whole genome sequences of Halomonas strains

| PRJNA961785 | ENA

Halomonas

Project description:Genome sequencing of the type strains of Halomonas sinaiensis and Halomonas caseinilytica

| PRJDB4878 | ENA

Baseline Proteomics Characterisation of Biomanufacturing Organism Halomonas Bluephagenesis

Project description:Biomanufacturing remains financially uncompetitive with the lower cost but higher carbon emitting hydrocarbon based chemical industry. Novel chassis organisms may enable cost reductions with respect to traditional chassis such as E. coli and so open an economic rout to low emission biomanufacturing. Extremophile bacteria exemplify that potential. Salt tolerant halomonas species thrive in conditions inimical to other organisms. Their adoption would eliminate the cost of sterilising equipment. Novel chassis are inevitably poorly understood in comparison to established organisms. Rapid characterisation and community data sharing will facilitate organisms’ adoption for biomanufacturing. This paper describes baseline proteomics data set for Halomonas bluephagenesis TD01 under active development for biomanufactoring. The data record comprises a newly sequenced genome for the organism; evidence for expression of 1150 proteins (30% of the proteome) including baseline quantification of 1050 proteins (27% of the proteome) and a spectral library enabling re-use for targeted proteomics assays. Protein data is annotated with KEGG Orthology enabling rapid matching of quantitative data to pathways of interest to biomanufacturing.

2022-07-11 | PXD030494 | Pride

PHA experiments

Project description:PHA production in sea-ice bacterial strains Halomonas and Paracoccus

| PRJEB41946 | ENA

Project description:Proto-dolomite formation in microbial consortia dominated by Halomonas strains

| PRJNA551135 | ENA

Project description:Proto-dolomite formation in microbial consortia dominated by Halomonas strains

| PRJNA546104 | ENA

Expression of ABC transporters negatively correlates with ectoine biosynthesis in Halomonas campaniensis under NaCl and ultraviolet mutagenesis treatments revealed by transcriptomic and proteomics combined analysis

Project description:Halomonas species are renowned for their production of organic compatible solutes, particularly ectoine. However, the identification of key regulatory genes governing ectoine production in Halomonas remains limited. In this study, we conducted a combined transcriptome-proteome analysis to unveil additional regulatory genes influencing ectoine biosynthesis, particularly under ultraviolet (UV) and salt conditions. NaCl induction resulted in a 20-fold increase, while UV treatment led to at least 2.5-fold increases in ectoine production. The number of overlapping genes between transcriptomic and proteomic analyses for three comparisons, i.e., non-UV with NaCl (UV0-NaCl) vs. non-UV without NaCl (UV0), UV strain 1 (UV1-NaCl) vs. UV0-NaCl, and UV strain 2 (UV2-NaCl) vs. UV0-NaCl were 137, 19, and 21, respectively. The overlapped Gene Ontology (GO) enrichments between transcriptomic and proteomic analyses include ATPase-coupled organic phosphonate, phosphonate transmembrane transporter activity, and ATP-binding casse

2024-11-02 | PXD057477 |

Project description:Transcriptomics of Halomonas TD1.0 and Halomonas deltaPS124

| PRJNA721089 | ENA