Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Cuphea hookeriana

ABSTRACT: Cuphea hookeriana overview

PROVIDER: PRJNA846467 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR18298639_1.fastq.gz	Fastqsanger.gz
	SRR18298639_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Cuphea hookeriana

Project description:Cuphea hookeriana walp.

| PRJNA814813 | ENA

Cuphea micropetala

Project description:Cuphea micropetala overview

| PRJNA846468 | ENA

Pleione hookeriana

Project description:Pleione hookeriana overview

| PRJNA846441 | ENA

Cuphea

Project description:Cuphea seed transcriptomes

| PRJNA294135 | ENA

Cuphea micropetala

Project description:Cuphea micropetala Genome sequencing and assembly

| PRJNA814819 | ENA

Pleione hookeriana

Project description:Pleione hookeriana (Lindl.)B.S.Williams Raw sequence reads

| PRJNA755890 | ENA

The chloroplast genome of <i>Cuphea hookeriana</i> Walp. (Lythraceae), a Mexico ornamental plant.

Project description:Cuphea hookeriana Walp. is an ornamental plant belonging to the Lythraceae. In this study, we reported the complete chloroplast (cp) genome sequence here and analyzed the phylogenetic relationship among Lythraceae plants. The length of the cp genome was 158,999 bp, including a large single-copy (LSC, 89,311 bp) region and a small single-copy (SSC, 18,436 bp) region separated by a pair of inverted repeats (IRs, 25,626 bp). There were 72 unique protein-coding genes (PCGs), 30 transfer RNA (tRNA) genes, and four ribosomal RNA (rRNA) genes in the cp genome of C. hookeriana. A total of 223 simple sequence repeats (SSRs) and 34 long repeat sequences were identified. Phylogenetic analyses using maximum-likelihood (ML) revealed that C. hookeriana was close to C. hyssopifolia. In addition, the two Cuphea species were the sister group of Woodfordia fruticosa.

| S-EPMC10132219 | biostudies-literature

Banksia hookeriana cultivar:Meissner

Project description:Banksia hookeriana cultivar:Meissner Transcriptome or Gene expression

| PRJNA263428 | ENA

Papilionanthe hookeriana x Papilionanthe teres cultivar:Agnes

Project description:Papilionanthe hookeriana x Papilionanthe teres cultivar:Agnes Genome sequencing and assembly

| PRJNA764569 | ENA

Characterization of Leaf Transcriptome in Banksia hookeriana.

Project description:Banksia is a significant element in vegetation of southwestern Australia, a biodiversity hotspot with global significance. In particular, Banksia hookeriana represents a species with significant economic and ecological importance in the region. For better conservation and management, we reported an overview of transcriptome of B. hookeriana using RNA-seq and de novo assembly. We have generated a total of 202.7 million reads (18.91 billion of nucleotides) from four leaf samples in four plants of B. hookeriana, and assembled 59,063 unigenes (average size=1098bp) through de novotranscriptome assembly. Among them, 39,686 unigenes were annotated against the Swiss-Prot, Clusters of Orthologous Groups (COG), and NCBI non-redundant (NR) protein databases. We showed that there was approximately one single nucleotide polymorphism (SNP) per 5.6-7.1kb in the transcriptome, and the ratio of transitional to transversional polymorphisms was approximately 1.82. We compared unigenes of B. hookeriana to those of Arabidopsis thaliana and Nelumbo nucifera through sequence homology, Gene Ontology (GO) annotation, and KEGG pathway analyses. The comparative analysis revealed that unigenes of B. hookeriana were closely related to those of N. nucifera. B. hookeriana, N. nucifera, and A. thaliana shared similar GO annotations but different distributions in KEGG pathways, indicating that B. hookeriana has adapted to dry-Mediterranean type shrublands via regulating expression of specific genes. In total 1927 potential simple sequence repeat (SSR) markers were discovered, which could be used in the genotype and genetic diversity studies of the Banksia genus. Our results provide valuable sequence resource for further study in Banksia.

| S-EPMC5339403 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data