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Soil and phyllosphere

ABSTRACT: soil and phyllosphere Raw sequence reads

PROVIDER: PRJNA849277 | ENA |

REPOSITORIES: ENA

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Dataset's files

Source:

			Action	DRS
	SRR20279900.fastq.gz	Fastqsanger.gz
	SRR20280000.fastq.gz	Fastqsanger.gz
	SRR20280400.fastq.gz	Fastqsanger.gz
	SRR20280500.fastq.gz	Fastqsanger.gz
	SRR20280600.fastq.gz	Fastqsanger.gz

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Project description:Arthrobacter chlorophenolicus A6 is a 4-chlorophenol degrading soil bacterium with high phyllosphere colonization capacity. Till now the genetic basis for the phyllosphere competency of Arthrobacter or other pollutant-degrading bacteria is uncertain. We investigated global gene expression profile of A. chlorophenolicus grown in the phyllosphere of common bean (Phaseolus vulgaris) compared to growth on agar surfaces. We designed transcriptome arrays and investigated which genes had different transcript levels in the phyllosphere of common bean (Phaseolus vulgaris) as compared to agar surfaces. Since water availability is considered an important factor in phyllosphere survival and activity, we included both high and low relative humidity treatments for the phyllosphere-grown cells. In addition, we determined the expression profile under pollutant exposure by the inclusion of two agar surface treatments, i.e. with and without 4-chlorophenol.

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