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AP-2β activates enhancers that define mammary hormone sensing cell identity

ABSTRACT: AP-2β activates enhancers that define mammary hormone sensing cell identity

PROVIDER: PRJNA855883 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR19903600.fastq.gz	Fastqsanger.gz
	SRR19903601.fastq.gz	Fastqsanger.gz
	SRR19903602.fastq.gz	Fastqsanger.gz
	SRR19903603.fastq.gz	Fastqsanger.gz
	SRR19903604.fastq.gz	Fastqsanger.gz

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AP-2β activates enhancers that define mammary hormone sensing cell identity [ChIP-Seq]

Project description:The Activating Protein 2β transcription factor (TFAP2B; AP-2β) is a marker for both lobular and molecular apocrine/HER2-E breast cancers, despite these tumours having very different prognoses. We show that simultaneous expression of both AP-2β and the estrogen receptor (ESR1, ER) marks well differentiated, low proliferation cells that are characteristic of luminal A lobular tumours, but loss of ER expression occurs when the tumour cells progress to molecular apocrine tumours. To discover potential explanations for this behaviour we performed chromatin immunoprecipitation sequencing (ChIP-seq) for AP-2β, AR, GATA3, FOXA1 and H3K27 acetylation in ER-negative MDA-MB-453 breast cancer cells. We find that all four transcription factors frequently bind to the same enhancers and that these enhancers are more likely to be active when AP-2β is present. Molecular apocrine genes are significantly more likely to have enhancers bound to all four transcription factors flanked by H3K27 acetylation. When AP-2β binds separately from the other factors, it binds close to the transcription start site, where it shows very high enrichment for H3K27 acetylation. AP-2 family proteins activate transcription by recruiting CITED proteins and p300/CBP. Since AR, FOXA1 and GATA3 are themselves able to recruit histone acetyl-transferases, we infer that AP-2β regulates the activity of those histone acetyl-transferases. We propose that this broad fundamental role in transcription explains the contradictory functions, both oncogenic and tumour suppressing, that have been assigned to AP-2 family members in previous studies on cancer.

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Project description:AP-2β activates enhancers that define mammary hormone sensing cell identity [ChIP-Seq]

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Project description:AP-2β activates enhancers that define mammary hormone sensing cell identity [RNA-seq]

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AP-2β activates enhancers that define mammary hormone sensing cell identity

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