Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Marine plankton metagenome

ABSTRACT: HOT cruise 319 enriched seawater sequencing from Station ALOHA

PROVIDER: PRJNA855972 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR20299300_1.fastq.gz	Fastqsanger.gz
	SRR20299301_1.fastq.gz	Fastqsanger.gz
	SRR20299302_1.fastq.gz	Fastqsanger.gz
	SRR20299303_1.fastq.gz	Fastqsanger.gz
	SRR20299304_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 10

Similar Datasets

marine plankton metagenome

Project description:Assembly Free Viral Genomes from Station ALOHA

| PRJNA529454 | ENA

marine plankton metagenome

Project description:HOT ALOHA metagenomic time and depth series

| PRJNA352737 | ENA

marine metagenome

Project description:Metagenomes from Station ALOHA, HOT 152

| PRJNA301051 | ENA

marine metagenome

Project description:HOT Site Station ALOHA Environmental Sampling Metagenome

| PRJNA29033 | ENA

marine metagenome

Project description:Marine picoplanktonic community from Hawaii Ocean Times Series Station 2 (HOT/ALOHA) metatranscriptome

| PRJNA366546 | ENA

marine plankton metagenome

Project description:2021 SCOPE PARticles And Growth in the Oceanic Nutricline (SCOPE-PARAGON) Cruise

| PRJNA966198 | ENA

marine plankton metatranscriptome

Project description:2018 SCOPE Falkor Cruise Diel Metatranscriptomic Survey

| PRJNA962143 | ENA

marine metagenome

Project description:Temporal sampling of marine metagenomes from Station ALOHA and BATS

| PRJNA385855 | ENA

marine plankton metagenome

Project description:Microbial diversity at a coastal time-series station in the Gulf of Maine

| PRJNA420516 | ENA

Kīlauea lava fuels phytoplankton bloom in the North Pacific Ocean - study of particulate metabolites

Project description:These data are relative concentrations of targeted metabolites measured in particulate matter collected from near the Island of Hawai’i in July 2018 during the Kilauea eruption. Six stations were sampled, with station 2 representing the most geothermally impacted station closest to the lava entry. Station 6 was the most oligotrophic station. The particulate metabolites show evidence of altered community composition and metabolism at the geothermally impacted station. This station was within a phytoplankton bloom. The bloom was stimulated by lava heating deep seawater and driving upwelling, which then provided nutrients for diatom growth. See Wilson and Hawco, et. al. 2019 (DOI: 10.1126/science.aax4767) for a complete description of sample collection, phytoplankton bloom dynamics, and chemical modifications of seawater due to the eruption. Metabolites with high concentration (relative abundance per L of seawater) in the geothermally impacted station (St 2) compared to the other stations were: cytosine, hydroxyectoine, adenine, adenosine, thymine, glutamic acid, ectoine, deoxyadenosine, UDP-glucosamine, and guanosine. After normalizing to the particulate carbon concentration at each station, guanosine, glutamic acid, hydroxyectoine, ectoine, adenosine, deoxyadenosine, and UDP-glucosamine were enriched in the geothermally impacted station relative to other stations. Ectoine was the metabolite with the largest change between St 2 and St 6, regardless of normalization to L of seawater or to moles of particulate carbon, with dramatically higher concentrations in the geothermally impacted waters. Except for glutamic and proline, particulate amino acids were generally in higher concentrations in the oligotrophic station.

2022-08-10 | ST002266 | MetabolomicsWorkbench

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data