Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Agrobacterium tumefaciens

ABSTRACT: Agrobacterium tumefaciens Genome sequencing and assembly

PROVIDER: PRJNA856860 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR21562299_1.fastq.gz	Fastqsanger.gz
	SRR21562299_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 3 of 3

Similar Datasets

Agrobacterium tumefaciens C58 whole-genome tiling microarray design and validation

Project description:This research focuses on the design, manufacturing and validation of a new Agrobacterium tumefaciens C58 whole-genome tiling microarray platform for novel RNA transcript discovery. A whole-genome tiling microarray allows both annotated genes as well as previously unknown RNA transcripts to be detected and quantified at once. The Agrobacterium tumefaciens C58 genome is re-acquired with next-generation sequencing and then used to design the tilinlg microarray with the thermodynamic analysis program Picky. Validations are performed by subjecting Agrobacterium tumefaciens C58 under various growth conditions and then using the tling microarrays to verify expected gene expression patterns.

2014-09-25 | GSE61737 | GEO

Agrobacterium tumefaciens

Project description:Agrobacterium tumefaciens Genome sequencing

| PRJNA1185910 | ENA

Agrobacterium tumefaciens

Project description:Agrobacterium tumefaciens Genome sequencing

| PRJNA734751 | ENA

Agrobacterium tumefaciens

Project description:Agrobacterium tumefaciens genome sequencing

| PRJNA543684 | ENA

Agrobacterium tumefaciens

Project description:Agrobacterium tumefaciens Genome sequencing

| PRJNA1111934 | ENA

Agrobacterium tumefaciens CCNWGS0286

Project description:Agrobacterium tumefaciens CCNWGS0286 Genome sequencing and assembly

| PRJNA72949 | ENA

Agrobacterium tumefaciens GW4

Project description:Agrobacterium tumefaciens GW4 Genome sequencing and assembly

| PRJNA196211 | ENA

Agrobacterium tumefaciens WRT31

Project description:Agrobacterium tumefaciens WRT31 Genome sequencing and assembly

| PRJNA191529 | ENA

Arabidopsis thaliana Col-0 leaf transcriptome response to Agrobacterium tumefaciens C58

Project description:As sessile organisms, plants require dynamic pathways in order to recognize pathogens and coordinate plant defenses by signalling. Agrobacterium tumefaciens C58 is able to avoid triggering plant defenses prior to entering the cell, and therefore is only detected once infection has begun making Agrobacterium a plant pathogen to numerous plant species. Understanding plant responses to Agrobacterium will be useful in improving plant defenses and potentially may also improve plant transformation efficiency. Microarrays were utilized for detailing the global gene expression pattern in A. thaliana Col-0 leafs in response to A. tumefaciens C58 for the identification of differentially expressed genes.

2014-10-28 | GSE62749 | GEO

Arabidopsis thaliana Col-0 root transcriptome response to Agrobacterium tumefaciens C58

Project description:As sessile organisms, plants require dynamic pathways in order to recognize pathogens and coordinate plant defenses by signalling. Agrobacterium tumefaciens C58 is able to avoid triggering plant defenses prior to entering the cell, and therefore is only detected once infection has begun making Agrobacterium a plant pathogen to numerous plant species. Understanding plant responses to Agrobacterium will be useful in improving plant defenses and potentially may also improve plant transformation efficiency. Microarrays were utilized for detailing the global gene expression pattern in A. thaliana Col-0 roots in response to A. tumefaciens C58 for the identification of differentially expressed genes.

2014-10-28 | GSE62750 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data