Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Bacteria in pumpkin Endophytic bacteria

PROVIDER: PRJNA856980 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR20047041_1.fastq.gz	Fastqsanger.gz
	SRR20047041_2.fastq.gz	Fastqsanger.gz
	SRR20047042_1.fastq.gz	Fastqsanger.gz
	SRR20047042_2.fastq.gz	Fastqsanger.gz
	SRR20047043_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 36

Similar Datasets

Project description:Bacteria in pumpkin rhizosphere soil

| PRJNA856634 | ENA

Project description:Endophytic bacteria

| PRJNA1080076 | ENA

Project description:ENDOPHYTIC BACTERIA

| PRJNA870280 | ENA

RNA-seq Transcriptional Profiling of Herbaspirillum seropedicae Colonizing Bread Wheat (Triticum aestivum) Roots.

Project description:H. seropedicae is a diazotrophic and endophytic bacterium that associates with economically important grasses promoting plant growth and increasing productivity. To identify genes related to bacterial ability to colonize and promote plant growth wheat seedlings growing hydroponically in Hoaglandâs medium were inoculated with H. seropedicae the bacteria and incubated for 3 days. mRNA from the bacteria present in the root surface and in the plant medium were purified, depleted from rRNA and used for RNA-seq profiling. RT-qPCR analyses were conducted to confirm regulation of selected genes. Comparison of RNA profile of bacteria attached to the root and planktonic revealed an extensive metabolic adaptation to the epiphytic life style.

2016-07-03 | E-MTAB-3646 | biostudies-arrayexpress

Project description:Onion endophytic bacteria

| PRJNA1072247 | ENA

Project description:Bacteria in sugarcane endophytic bacteria

| PRJNA928696 | ENA

Transcriptome analysis of the effect of far-red light on hypocotyl elongation of pumpkin

Project description:The mechanism of hypocotyl elongation in pumpkin mediate by end of day far red was analyzed by transcriptome analysis

2021-04-28 | GSE173421 | GEO

Endophytic bacteria are key players in the modulation of the secondary metabolome of Lithospermum officinale L.

Project description:Endophytic bacteria influence plant growth and development and therefore are an attractive resource for applications in agriculture. However, little is known about the impact of these microorganisms on secondary metabolite (SM) production by medicinal plants. Here we assessed, for the first time, the effects of root endophytic bacteria on the modulation of SMs in the medicinal plant Lithospermum officinale (Boraginaceae family), with a focus on the naphthoquinones alkannin/shikonin (A/S). The study was conducted using a newly developed in vitro system as well as in the greenhouse. Targeted and non-targeted metabolomics approaches were used and supported by expression analysis of the gene PGT, encoding a key enzyme in the A/S biosynthesis pathway. Three bacterial strains, Chitinophaga sp. R-73072, Xanthomonas sp. R-73098 and Pseudomonas sp. R-71838 induced a significant increase of diverse SMs, including A/S, in L. officinale in both systems, demonstrating the strength of our approach for screening A/S derivative-inducing bacteria. Our results highlight the impact of root-endophytic bacteria on secondary metabolism in plants and indicate that production of A/S derivatives in planta likely involves cross-modulation of different metabolic pathways that can be manipulated by bacterial endophytes.

2021-08-11 | ST002062 | MetabolomicsWorkbench

Project description:Differences of endophytic bacterial composition between giant and small pumpkin varieties

| PRJNA899337 | ENA

Genome-wide RNA-Seq of rRNA depleted total RNA from Arabidopsis thaliana WT (Col-0) and pumpkin mutant

Project description:Purpose: Analyses of transcriptomes of WT and pumpkin mutants, in order to compare gene expression of typically NEP or PEP-transcribed plastid genes.

2019-10-01 | GSE121776 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data