Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Single-nucleus sequencing deciphers developmental trajectories in rice pistils

ABSTRACT: Single-nucleus sequencing deciphers developmental trajectories in rice pistils

PROVIDER: PRJNA859905 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR20291971_1.fastq.gz	Fastqsanger.gz
	SRR20291971_2.fastq.gz	Fastqsanger.gz
	SRR20291972_1.fastq.gz	Fastqsanger.gz
	SRR20291972_2.fastq.gz	Fastqsanger.gz
	SRR20291973_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 28

Similar Datasets

Single-nucleus sequencing deciphers developmental trajectories in rice pistils

Project description:Angiosperms possess a characteristic life cycle with an alternation of sporophyte and gametophyte generations, which happens in plant organs like pistils. Rice pistils contain ovules and receive pollen for successful fertilization to produce grains. The cellular expression profile in rice pistils is largely unknown. Here we show a cell atlas of rice pistils before fertilization by droplet-based single-nucleus RNA sequencing. The Ab initio marker identification validated by in situ hybridization assists the cell-type annotation, revealing cell heterogeneity between ovule and carpel lineages. This SuperSeries is composed of the SubSeries listed below.

2023-02-28 | GSE208433 | GEO

Single-nucleus sequencing deciphers lineage trajectories in rice pistils [snRNA-seq]

Project description:Single-nucleus sequencing deciphers lineage trajectories in rice pistils [snRNA-seq]

| PRJNA859914 | ENA

Single-nucleus sequencing deciphers lineage trajectories in rice pistils [bulk RNA-seq]

Project description:Single-nucleus sequencing deciphers lineage trajectories in rice pistils [bulk RNA-seq]

| PRJNA859915 | ENA

Single-nucleus sequencing deciphers lineage trajectories in rice pistils [snRNA-seq]

2023-03-02 | GSE208432 | GEO

Single-nucleus sequencing deciphers lineage trajectories in rice pistils [bulk RNA-seq]

2023-03-02 | GSE208431 | GEO

Genomics of Developmental Trajectories in Twins

Project description:Genomics of Developmental Trajectories in Twins

| PRJNA171522 | ENA

Non-coding RNAs shape cortical neurons developmental trajectories

Project description:Non-coding RNAs shape cortical neurons developmental trajectories

| PRJNA669828 | ENA

Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis

Project description:During embryogenesis, cells acquire distinct fates by transitioning through transcriptional states. To uncover these transcriptional trajectories during zebrafish embryogenesis, we sequenced 38,731 cells and developed URD, a simulated diffusion-based computational reconstruction method. URD identified the trajectories of 25 cell types through early somitogenesis, gene expression along them, and their spatial origin in the blastula. Analysis of Nodal signaling mutants revealed that their transcriptomes were canalized into a subset of wild-type transcriptional trajectories. Some wild-type developmental branchpoints contained cells expressing genes characteristic of multiple fates. These cells appeared to trans-specify from one fate to another. These findings reconstruct the transcriptional trajectories of a vertebrate embryo, highlight the concurrent canalization and plasticity of embryonic specification, and provide a framework to reconstruct complex developmental trees from single-cell transcriptomes. This SuperSeries is composed of the SubSeries listed below.

2018-04-27 | GSE106587 | GEO

Deep dynamical modelling of developmental trajectories with temporal transcriptomics

Project description:Deep dynamical modelling of developmental trajectories with temporal transcriptomics

| PRJNA991515 | ENA

Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis

Project description:Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis

| PRJNA417291 | ENA