Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Bulk RNAseq of the HhipCKO (UBCcreER/Myh11creER/Hhipflox/flox) and control (Hhipflox/flox) adult mouse mesenchymal cells

ABSTRACT: Bulk RNAseq of the HhipCKO (UBCcreER/Myh11creER/Hhipflox/flox) and control (Hhipflox/flox) adult mouse mesenchymal cells

PROVIDER: PRJNA862175 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR22096566_1.fastq.gz	Fastqsanger.gz
	SRR22096566_2.fastq.gz	Fastqsanger.gz
	SRR22096567_1.fastq.gz	Fastqsanger.gz
	SRR22096567_2.fastq.gz	Fastqsanger.gz
	SRR22096568_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 16

Similar Datasets

Bulk RNAseq of the HhipCKO (UBCcreER/Myh11creER/Hhipflox/flox) and control (Hhipflox/flox) adult mouse mesenchymal cells

Project description:To test the effect of Hhip deletion on mesenchymal cells. We examined the transcriptome of HhipCKO vs. control by bulk RNAseq.

2023-02-13 | GSE209734 | GEO

Bulk RNAseq of the lung mesenchymal cells from IFNgama-gain-of-function (Yeti+/-) and control (wildtype) adult mice

Project description:To test the effect of IFN-gama on mesenchymal cells. We examined the mesencyhaml transcriptome of Yeti vs. control by bulk RNAseq.

2023-02-27 | GSE209735 | GEO

RNAseq of malignant peripheral nerve sheath tumors from Nf1 flox/flox Arf flox/flox PostnCre+ mice

Project description:RNAseq of malignant peripheral nerve sheath tumors from Nf1 flox/flox Arf flox/flox PostnCre+ mice

| PRJNA973620 | ENA

Bulk RNAseq of fetal human lung fibroblasts (MRC5) and primary adult human lung mesenchyme (AHLM)

Project description:The fetal human lung fibroblasts (MRC5) and primary adult human lung mesenchyme (AHLM) have different capabilities in supporting human alveolar type 2 cell transdifferentiation into basal KRT5+ cells.Therefore, we examined the transcriptome of AHLM vs. MRC5 by bulk RNAseq.

2021-11-01 | GSE148992 | GEO

Bulk RNAseq of the lung mesenchymal cells from IFNgama-gain-of-function (Yeti+/-) and control (wildtype) adult mice

Project description:Bulk RNAseq of the lung mesenchymal cells from IFNgama-gain-of-function (Yeti+/-) and control (wildtype) adult mice

| PRJNA862174 | ENA

RNAseq of malignant peripheral nerve sheath tumors from Nf1 flox/flox Arf flox/flox PostnCre+ mice

Project description:Malignant peripheral nerve sheath tumors (MPNSTs) are the leading cause of premature death for patients with Neurofibromatosis type 1 and no approved targeted therapies are available. Transformation from Nf1-null benign plexiform neurofibromas is driven by the loss of the Cdkn2a (Arf) locus. Here, genetically engineered mouse models with combined Nf1 flox/flox and Arf flox/flox alleles were used (crossed with Postn-Cre+ mice). Tissue from MPNSTs that form in the Nf1-/-;Arf-/- setting were used for mRNA sequencing and compared to benign plexiform neurofibroma tissue (Nf1-/- from Nf1 flox/flox; Postn-Cre+ mice, GSE213789) to identify transcriptome signatures from MPNST and compare them to benign plexiform neurofibroma.

2023-12-12 | GSE232707 | GEO

RNA-seq analysis of synovial fibroblasts isolated from Ets1-flox/flox and Col6a1-Cre-Ets1-flox/flox mice of serum transfer-induced arthritis (STIA)

Project description:Synovial fibroblasts critically contribute to the pathogenesis of rheumatoid arthritis (RA) by acquiring either a pro-inflammatory or tissue-destructive phenotype. To explore the molecular mechanisms underlying the tissue-destructive fibroblast phenotype in arthritis, we performed bulk RNA-sequencing analysis on the synovial fibroblasts which were isolated from Col6a1-Cre-Ets1-flox/flox (Ets1ΔFib) and Ets1-flox/flox (Ets1flox) mice.

2022-07-06 | GSE201310 | GEO

Bulk RNAseq of HUVECs

Project description:Bulk RNAseq of HUVECs

| PRJNA862721 | ENA

Bulk RNAseq of HDLECs

Project description:Bulk RNAseq of HDLECs

| PRJNA877122 | ENA

Adiponectin-cre FTO flox/flox and FTO flox/flox mouse white fat tissues

Project description:Single nucleotide polymorphisms in intron 1 of the fat mass and obesity-associated (FTO) gene were found to be associated with an increased risk of adult obesity. Enhanced FTO expression in mice leads to hyperphagia, increased fat mass, and higher body weight. Neuronal-specific FTOâ??deleted mice have an identical lean body weight phenotype to global FTO-deleted mice. The physiological role of adipose FTO in the homeostasis of energy regulation remains to be elucidated. We used microarrays to elucidate the metabolic pathways that are regulated by FTO in the white fat. FTO flox/flox and Adiponectin-cre FTO flox/flox (AFO) mice were fed with chow diet. White fat tissues from epididymal adipose pad were harvested under ad lib condition for RNA isolation. Three independent pools of FTO flox/flox and AFO mouse white fat RNA were included in the study.

2016-07-03 | E-GEOD-65098 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data