Project description:We performed m6A-RIPs in Ascl1-induced neurons (iNeurons) to investigate the neuronal m6A epitranscriptome. Immunoprecipitation was done twice using two different antibodies, acquired from Abcam and Synaptic Systems (SySy), allowing for a more robust detection of m6A modification marks. Additionally, RIP-seq was performed separately with intact and fragmented RNA. The former approach allowed to identify proportions of m6A-modified transcripts among the total number, while the latter approach provided the information to identify genomic coordinates of m6A peaks.

2023-07-12 | E-MTAB-9542 | biostudies-arrayexpress

Identifying CSTF2-bound RNA Sequences in HUH7 Cells using RIP-seq

Project description:CSTF2, an RNA-binding protein, and its target genes in hepatocellular carcinoma remain unreported. Screening for potential CSTF2-bound RNA sequences was performed using RIP-seq technique in HUH7 cells.

2024-05-30 | GSE268347 | GEO

RIP-seq of SRSF7 and m6A-RIP seq of Huh7 cells

Project description:This SuperSeries is composed of the SubSeries listed below.

2022-12-31 | GSE209980 | GEO

m6A-RIP-seq of Ascl1-induced neurons.

Project description:m6A-RIP-seq of Ascl1-induced neurons.

| PRJEB40287 | ENA

m6A-RIP-seq of heat shock-exposed HeLa cells upon HSATIII knockdown

Project description:To investigate the effect of HSATIII lncRNA on m6A modification, we performed m6A-RIP(RNA immuno precipitation) RNA-seq from heat shock-exposed HeLa cells upon HSATIII knockdown.

2021-04-30 | GSE164200 | GEO

The m6A reader YTHDF1 attenuates fulminant hepatitis via MFG-E8 translation in an m6A dependent manner [RIP-seq]

Project description:We report the application of RNA-Seq, m6A-Seq and RIP-Seq to find out YTHDF1 regulate the target genes.

2023-08-21 | GSE228280 | GEO