Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Integrated analysis of transcriptome and small RNAome reveals the regulatory network for rapid growth in Mikania micrantha [RNA-seq]

ABSTRACT: Integrated analysis of transcriptome and small RNAome reveals the regulatory network for rapid growth in Mikania micrantha [RNA-seq]

PROVIDER: PRJNA865131 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR20749078_1.fastq.gz	Fastqsanger.gz
	SRR20749078_2.fastq.gz	Fastqsanger.gz
	SRR20749079_1.fastq.gz	Fastqsanger.gz
	SRR20749079_2.fastq.gz	Fastqsanger.gz
	SRR20749080_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 30

Similar Datasets

Integrated analysis of transcriptome and small RNAome reveals the regulatory network for rapid growth in Mikania micrantha [sRNA-seq]

Project description:M. micrantha has caused huge ecological damage and economic losses worldwide due to its rapid growth and serious invasion. However, the underlying molecular mechanisms of its rapid growth and environmental adaption remain unclear. Here, we performed transcriptome and small RNA sequencing with five tissues of M. micrantha to dissect miRNA-mediated regulation in M. micrantha. WGCNA and GO enrichment analysis of transcriptome identified the gene association patterns and potential key regulatory genes for plant growth in each tissue. The genes highly correlated with leaf and stem tissues were mainly involved in the chlorophyll synthesis, response to auxin, the CAM pathway and other photosynthesis-related processes, which promoted the fast growth of M. micrantha. Importantly, we identified 350 conserved and 192 novel miRNAs, many of which displayed differential expression patterns among tissues. PsRNA target prediction analysis uncovered target genes of both conserved and novel miRNAs, including GRFs and TCPs, which were essential for plant growth and development. Further analysis revealed that miRNAs contributed to the regulation of tissue-specific gene expression in M. micrantha, such as mmi-miR396 and mmi-miR319. Taken together, our study uncovered the miRNA-mRNA regulatory networks and the potential vital roles of miRNAs in modulating the rapid growth of M. micrantha.

2023-08-01 | GSE210299 | GEO

Integrated analysis of transcriptome and small RNAome reveals the regulatory network for rapid growth in Mikania micrantha [RNA-seq]

2023-08-01 | GSE210298 | GEO

Mikania micrantha

Project description:Mikania micrantha

| PRJNA63499 | ENA

Integrated analysis of transcriptome and small RNAome reveals the regulatory network for rapid growth in Mikania micrantha

Project description:Integrated analysis of transcriptome and small RNAome reveals the regulatory network for rapid growth in Mikania micrantha

| PRJNA865126 | ENA

Mikania micrantha

Project description:Mikania micrantha overview

| PRJNA83769 | ENA

Integrated analysis of transcriptome and small RNAome reveals the regulatory network for rapid growth in Mikania micrantha [sRNA-seq]

Project description:Integrated analysis of transcriptome and small RNAome reveals the regulatory network for rapid growth in Mikania micrantha [sRNA-seq]

| PRJNA865130 | ENA

Mikania micrantha

Project description:Mikania micrantha Raw sequence reads

| PRJNA891848 | ENA

Mikania micrantha

Project description:Mikania micrantha Raw sequence reads

| PRJNA598115 | ENA

Mikania micrantha

Project description:Mikania micrantha Raw sequence reads

| PRJNA590555 | ENA

Mikania micrantha

Project description:Mikania micrantha Raw sequence reads