Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Xbp1 binding during log phase and stationary phase.

ABSTRACT: Xbp1 binding during log phase and stationary phase.

PROVIDER: PRJNA868333 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR21006440_1.fastq.gz	Fastqsanger.gz
	SRR21006440_2.fastq.gz	Fastqsanger.gz
	SRR21006441_1.fastq.gz	Fastqsanger.gz
	SRR21006441_2.fastq.gz	Fastqsanger.gz
	SRR21006442_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

Xbp1 binding during log phase and stationary phase.

Project description:To determine where Xbp1 binds to chromatin during log phase and stationary phase, we performed ChIP-seq.

2022-08-17 | GSE210933 | GEO

Tup1 binding during log phase, diauxic shift, and stationary phase.

Project description:Tup1 binding during log phase, diauxic shift, and stationary phase.

| PRJNA868336 | ENA

Tup1 binding during log phase, diauxic shift, and stationary phase.

Project description:To determine where Tup1 binds to chromatin during log phase, diauxic shift and stationary phase, we performed ChIP-seq.

2022-08-17 | GSE210932 | GEO

Effect of Tup1, Xbp1, Isw2, and Sds3 on H3K23ac in stationary phase.

Project description:To investigate the effect of Tup1, Xbp1, Isw2, and Sds3 on H3K23acc we generated knockout strains and measured H3K23ac levels during stationary phase.

2022-08-17 | GSE210928 | GEO

Effect of Tup1, Xbp1, Isw2, and Sds3 on transcription in diauxic shift and stationary phase.

Project description:To investigate the effect of Tup1, Xbp1, Isw2, and Sds3 on transcription we generated knockout strains and measured their transcript abundance compared to wild type during diauxic shift and stationary phase.

2022-08-17 | GSE210930 | GEO

Pairwise comparison stationary phase vs mid-log

Project description:A pairwise comparison was performed between stationary phase specific samples and mid-log samples using four replicates and dye-swaps

2005-04-15 | E-UMCU-13 | biostudies-arrayexpress

Listeria monocytogenes Cold Regulon in Log- and Stationary-Phase cells

Project description:As the foodborne pathogen Listeria monocytogenes has the ability to grow at refrigeration temperatures, whole-genome microarray experiments were performed using L. monocytogenes strain 10403S to define the cold stress regulon and to identify genes differentially expressed during growth at 4°C and 37°C. Microarray analysis using a stringent cutoff (adjusted p<0.001; fold-change >2.0) revealed 105 and 170 genes that showed higher transcript levels in logarithmic- and stationary-phase cells, respectively, at 4°C (compared to cells at 37°C). A total of 74 and 102 genes showed lower transcript levels in logarithmic- and stationary-phase cells grown at 4°C, respectively. Genes upregulated at 4°C during both stationary- and log-phase included those encoding a two-component response regulator (lmo0287), a cold shock protein (cspL), and two RNA helicases (lmo0866 and lmo1722), whereas genes encoding selected virulence factors and heat shock proteins were downregulated at 4°C. Selected genes that were upregulated at 4°C during both stationary- and log-phase were confirmed by quantitative reverse transcriptase PCR. Our data show (i) a large number of L. monocytogenes genes are differentially expressed at 4 and 37°C with a larger number of genes showing higher transcript level at 4°C than genes showing lower transcript levels at 4°C; (ii) L. monocytogenes genes upregulated at 4°C include a number of genes and operons with previously reported or plausible roles in cold adaptation; and (iii) L. monocytogenes genes downregulated at 4°C include a number of virulence and virulence-associated genes as well as some heat shock genes. Keywords: Listeria monocytogenes, cold regulon, temperature

2007-08-31 | GSE7465 | GEO

Analysis of transcripts expressed during log and stationary phases in Xenorhabdus szentirmaii

Project description:To understand the molecular details of the biosynthesis, secretion, and/or mode of action of antimicrobials, we performed a comparative analysis of transcripts expressed during log and stationary phases of growth of in Xenorhabdus szentirmaii to identify the deferentially expressed genes. Total RNA was isolated from X. szentirmaii grown at log and stationary phases (Fig 3A, four biological replicates referred here Dey1, Dey2, Dey3 and Dey4 for the log phase and Dey5, Dey6, Dey7 and Dey8 for the stationary phase, Supplemental Table 1). The equal amount of total RNA was subjected to RNA sequencing analysis.

2025-03-31 | GSE289227 | GEO

The expression profiles of log-phase and stationary-phase cells of Shigella flexneri grown at 30 degrees and 37 degrees Celsius

Project description:To obtain a global view of the response of S. flexneri at the expression level induced by temperature up-shift, we compared the expression profiles of log-phase and stationary-phase cells grown at 30 degrees and 37 degrees Celsius.

2010-06-02 | GSE16535 | GEO

LIX11 vs H37Rv under Log vs stationary phase growth

Project description:Transcription analysis of ΔpknK mutant (LIX11) versus wild type H37Rv during logarithmic and stationary phase growth. This will elucidate the genes regulated by PknK during transition from logarithmic growth to stationary phase growth.

2012-06-02 | GSE37823 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data