Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Genome sequencing of Dermacentor variabilis (American dog tick) adult principal pseudohaplotype

PROVIDER: PRJNA868367 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR21008064_1.fastq.gz	Fastqsanger.gz
	SRR21008064_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Dermacentor variabilis

Project description:Dermacentor variabilis, American dog tick transcriptome

| PRJNA33177 | ENA

Dermacentor variabilis

Project description:Bacterial Microbiome of the American Dog Tick, Dermacentor variabilis

| PRJNA506792 | ENA

Project description:Genome sequencing of Dermacentor albipictus (winter tick) adult principal pseudohaplotype

| PRJNA866608 | ENA

Project description:Mitochondrial genomes of the American dog tick Dermacentor variabilis isolated from horses in the mid-western United States

| PRJNA885479 | ENA

Project description:Genome sequencing and assembly of Dermacentor andersoni adult female principal pseudohaplotype

| PRJNA767396 | ENA

Project description:Genome sequencing of Amblyomma americanum (lone star tick) adult principal pseudohaplotype

| PRJNA868053 | ENA

Project description:Genome sequencing of Tribolium brevicornis (North American flour beetle) adult principal pseudohaplotype

| PRJNA867719 | ENA

Dermacentor marginatus female adults transcriptome

Project description:The Ixodidea tick Dermacentor marginatus is a vector of many pathogens wide spread in Eurasia. Study of gene targets of the tick species provides insight to find novel tick protective antigen for drug development and vaccine targets. To obtain a broader picture of gene sequences and changes in expression level, we aimed to characterize the whole body transcriptome in D. marginatus adult female after engorgement and long-term starvation using RNA-seq. We have assembled and analyzed transcriptome of D. marginatus females 5 days after ecdysis, 24 h after a blood meal, and 6 months under controlled experimental conditions. Sequencing produced 30251 unigenes, of which 32% were annotated using Trinity. Gene expression was compared among groups differed by status as newly molted, starved and engorged female adult ticks. Nearly 1/3 of the unigenes in each group were differentially expressed compared to the other two group, and we found that the most numerous were proteins involved in catalytic and binding activities and apoptosis. Selected up-regulated differentially expressed genes in each group associated to protein, lipids, carbohydrate and chitin metabolism. Blood feeding and long-term starvation also caused genes differentially expressed in the defense response and antioxidant response. Finding the sequence information and expression pattern would be helpful in understanding molecular physiology of D. marginatus, and provides information for anti-tick vaccine and drug development.

2020-11-18 | GSE151667 | GEO

Dermacentor variabilis strain:In bred Virginia

Project description:Dermacentor variabilis transcriptome

| PRJNA67707 | ENA

Dermacentor andersoni

Project description:Genome sequencing of Dermacentor andersoni adult female alternate pseudohaplotype

| PRJNA813639 | ENA